Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq17 179 8e-40 seq14 87.8 4e-12 seq5 87.8 4e-12 seq4 87.8 4e-12 seq6 86.0 1e-11 seq1 86.0 1e-11 >seq17 Length=497611 Score = 179 bits (198), Expect = 8e-40 Identities = 285/405 (70%), Gaps = 4/405 (1%) Strand=Plus/Plus Query 61084 TTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAA 61143 ||| ||||||||||||||||||||| ||||||||||||||||||||||| |||| ||| | Sbjct 24939 TTTATCAAGCATCAACATCTGAACTTTATGGAAAAGTTCAAGAAATTCCACAAAAAGAGA 24998 Query 61144 GGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTT 61203 ||||| || ||||| | || || || | ||| || ||| | || || | ||||| Sbjct 24999 CAACTCCATTCTATCCAAGAAGTCCATACGCTGTCGCTAAATTGTATGCATTTTGGATAA 25058 Query 61204 GTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGA--TTTGTTTCAATCA 61261 |||||||| || || | ||||| || |||| ||||| | || ||||||| ||||| Sbjct 25059 TAAAAAATTATCGTGAAGCTTATGGTATCTTTGGTTGTAA-TGGAATTTTGTTT-AATCA 25116 Query 61262 CGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAA 61321 |||| ||| | |||||| || | ||||| || | || || || | || || || || Sbjct 25117 CGAGTCTCCAAGAAGAGGTAATAATTTTGTTACAAGAAAGATAACTAGAGCTGTAGCTAA 25176 Query 61322 TATTTTTAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTG 61381 || || ||||| || | | || | |||| || | || ||||| | ||||| Sbjct 25177 AATAAGTATTGGTGTACAAGAGAGTATATCATTAGGTAATCTTGATGCTAAACGTGATTG 25236 Query 61382 GGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGA 61441 |||| |||| || ||| | || ||||||||| || | ||||| ||| ||| || Sbjct 25237 GGGACATGCACGTGAATATGTTGAAGCTATGTGGAGAATCCTCCAACATGATGTTCCTGA 25296 Query 61442 TGACTACGTTATTGCGACTGGACAGACGACGAGTGTCCGTGAATT 61486 ||| | ||||| || || ||| | || ||||| | ||||| Sbjct 25297 TGATTTTGTTATAGCAACAGGAAAAACTCAAAGTGTAAGAGAATT 25341 >seq14 Length=747786 Score = 87.8 bits (96), Expect = 4e-12 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 165699 TTAA-AACGCT-TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGT 165756 |||| ||| || |||||| |||||||||||||||||| ||||||| ||||||||| || Sbjct 647081 TTAATAACACTATGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGT 647140 Query 165757 CGTGGGTTCGAGCCCCACGATGGGC 165781 || ||||||||||||| | ||||| Sbjct 647141 CGCGGGTTCGAGCCCCGCATTGGGC 647165 >seq5 Length=1449561 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| ||||||||| |||| ||||||||| Sbjct 778157 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 778098 Query 165769 CCCCACGATGGGC 165781 |||| | ||||| Sbjct 778097 CCCCGCATTGGGC 778085 >seq4 Length=1570035 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| ||||||||| |||| ||||||||| Sbjct 1484507 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 1484566 Query 165769 CCCCACGATGGGC 165781 |||| | ||||| Sbjct 1484567 CCCCGCATTGGGC 1484579 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 || |||||| |||||||||||||||||| ||||||| ||||||||| |||| |||||| Sbjct 524750 GCATGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTC 524809 Query 165766 GAGCCCC 165772 ||||||| Sbjct 524810 GAGCCCC 524816 >seq6 Length=1300811 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| ||||||||| |||| |||||||||| Sbjct 861042 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 861101 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 861102 CCCGCATTGGGC 861113 >seq1 Length=6158768 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| ||||||||| |||| |||||||||| Sbjct 3948490 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 3948549 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 3948550 CCCGCATTGGGC 3948561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057799468400300