Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq39 127 2e-24 >seq39 Length=206625 Score = 127 bits (140), Expect = 2e-24 Identities = 482/750 (64%), Gaps = 5/750 (1%) Strand=Plus/Plus Query 16629 CATCCAATGAAAATGTGTTATCTTGTTTA-TGAACAACACCC-AT-TCTTTGGTAATCGC 16685 ||||||| | ||| || |||| || | || ||| |||| || |||||| || || Sbjct 48612 CATCCAAGGTAAAAGTACGTTCTTCTTCAGTGCACATAACCCCATATCTTTGATATTCAG 48671 Query 16686 TAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAA 16745 ||| ||||| || || || || || || || | || | || |||||||||||| Sbjct 48672 AAACTTTCTTTTCAAAGAAATTTGTCTTTCCTTCAATTGAAAGGTTTACCATGAAATCAA 48731 Query 16746 AAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTA 16805 | ||||| || | | | ||||| | ||||| | | | ||| || | Sbjct 48732 ATGGATTTTTAACCTTATAAATTTTTGGCATGTTTAGTTCAGTTAAAAGGTGATCAGCAA 48791 Query 16806 CAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAG 16865 || |||| || || ||||||||| | ||||| || || | | || ||||||| Sbjct 48792 CATATTCAATGTAGGTACACATTAATCTTGAATTCATACCAATCATATCAACAGGAAGAG 48851 Query 16866 CTTCCGTCAAAAATCGTTGCTCTATAACAACCGC-TTCCTTAATAATACTAGCAACTCGT 16924 | || || ||| || | ||| || | || || || || | || | | ||| | || Sbjct 48852 CATCAGTTAAATATTCCTTCTCAATTTCGACAGCATTTCTAATTATTTCATGCA-CACGC 48910 Query 16925 TCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAAT 16984 || | |||||| ||| | ||||| ||||||| ||||| || ||||| | ||||||| Sbjct 48911 TCTACAGACGGTTTATTCTCAAGATAACTAAACATGAGACAAGCAAAATCTCTATGTAAT 48970 Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 || || |||||| ||| | ||| || ||| ||| || ||||| ||| ||||| Sbjct 48971 CCTTCATCTCTGGAGATTAATTCATTTGAATGACACAAACCTGGCATTAATCCACGTTTT 49030 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 ||||||||||| || | || || || ||||| || ||||| || || || | ||||| Sbjct 49031 TTTAACCAAAAGATTGAAGCAAAAGAACCAGAGAAAAATATTCCTTCAACAGCGGCAAAA 49090 Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCG 17164 || || | ||||| | | | || | || | ||||||| | |||| || Sbjct 49091 GCAATAATACGTTCTCCAAAAGATGCATTCTTATCGTTAATCCATCTTAAAGCCCAATCA 49150 Query 17165 GCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGT 17224 || || | ||| || | || | | | || || || || | || | | |||| | Sbjct 49151 GCCTTCTTCTTGATAAATTCAAACTCTGTTAAAGCATTGAAAAGCTTATTTCTTTCATCA 49210 Query 17225 AGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATG 17284 ||| ||||| || || || | | ||||| || || || |||||||| Sbjct 49211 GTGTCACGGATATATGTTTCAATTAACTTGGAATACATCTCACTATGAATATTCTCCATA 49270 Query 17285 GCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGT 17344 || || |||||||| |||||| | || ||||| | | ||| ||||| | |||| | Sbjct 49271 GCAATTTGAAATCCATAAAAGAAACGTGCTTCAGGGACTTGGACTTCTTTTGAAAATCTT 49330 Query 17345 TCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | | |||||| || || || || ||| Sbjct 49331 TCAACCAAATTTTCATTGACAATTCCATCG 49360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517533890530800