Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq39 163 3e-35 >seq39 Length=206625 Score = 163 bits (180), Expect = 3e-35 Identities = 475/729 (65%), Gaps = 7/729 (1%) Strand=Plus/Plus Query 15905 CCCAT-TCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGA 15963 ||||| |||||| || ||| ||| ||||| ||||| || || ||||| || | || Sbjct 48652 CCCATATCTTTGATATTCAGAAACTTTCTTTTCAAAGAAATTTGTCTTTCCTTCAATTGA 48711 Query 15964 TATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTC 16023 | ||| |||| |||||||| ||||| || | | | || || | ||||| Sbjct 48712 AAGGTTTACCATGAAATCAAATGGATTTTTAACCTTATAAATTTTTGGCATGTTTAGTTC 48771 Query 16024 CGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCC 16083 || | | ||| || ||| |||| || || ||||||||| |||| || || Sbjct 48772 AGTTAAAAGGTGATCAGCAACATATTCAATGTAGGTACACATTAATCTTGAATTCATACC 48831 Query 16084 TATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTT 16143 || | || |||||||| | |||||| ||| | || || | || || | | | Sbjct 48832 AATCATATCAACAGGAAGAGCATCAGTTAAATATTCCTTCTCAATTTCGACAGCATTTCT 48891 Query 16144 AATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACA 16203 ||| || || | || | |||||||| ||| | || | ||||||| ||||| Sbjct 48892 AATTATTTCATGCACACGCTCTACAGACGGTTTATTCTCAAGATAACTAAACATGAGACA 48951 Query 16204 CGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCC 16263 || || || | ||||| |||||| |||||| ||| | ||| || ||| | || || Sbjct 48952 AGCAAAATCTCTATGTAATCCTTCATCTCTGGAGATTAATTCATTTGAATGACACAAACC 49011 Query 16264 TGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATAT 16323 ||||||| ||| ||||| |||||||| || || | |||||| || || || || ||||| Sbjct 49012 TGGCATTAATCCACGTTTTTTTAACCAAAAGATTGAAGCAAAAGAACCAGAGAAAAATAT 49071 Query 16324 ACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAAT 16383 || ||||||| |||||||| || | ||||| | | | |||| |||| ||| Sbjct 49072 TCCTTCAACAGCGGCAAAAGCAATAATACGTTCTCCAAAAGATGCATTCTTATCGTTAAT 49131 Query 16384 CCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAA 16443 |||| | |||| || || || | || ||| | || | | | || || || || Sbjct 49132 CCATCTTAAAGCCCAATCAGCCTTCTTCTTGATAAATTCAAACTCTGTTAAAGCATTGAA 49191 Query 16444 CAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG---TACAT 16500 | || | | |||| | | | || ||||| || ||||| ||| || ||||| Sbjct 49192 AAGCTTATTTCTTTCATCAGTGTCACGGATATATGTTTCAAT---TAACTTGGAATACAT 49248 Query 16501 TTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTAT 16560 || || || ||||| || || || ||||||||||| ||| | || || || | | Sbjct 49249 CTCACTATGAATATTCTCCATAGCAATTTGAAATCCATAAAAGAAACGTGCTTCAGGGAC 49308 Query 16561 TTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGC 16620 ||| ||||| |||||| ||| ||| || ||||| || || || || ||||| Sbjct 49309 TTGGACTTCTTTTGAAAATCTTTCAACCAAATTTTCATTGACAATTCCATCGGAAGCAGC 49368 Query 16621 AAAAAACGC 16629 ||| || || Sbjct 49369 AAAGAAGGC 49377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511402829249200