Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq24 185 6e-42 >seq24 Length=311514 Score = 185 bits (204), Expect = 6e-42 Identities = 487/732 (67%), Gaps = 21/732 (3%) Strand=Plus/Minus Query 101533 TTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAATGTC 101592 |||||||||||| | ||| || ||| | || || || || ||||||| | ||||| Sbjct 229119 TTAAACAGCCATTTCCATCTTGATTGTTGGATGACACTTGTAATTTTCTAGAACAATGTT 229060 Query 101593 ATCTGCTTTAAAGTCATCAATGCATGAAACATTT---CTAGCAAATCTAAGTGTTGGAAA 101649 |||| || || ||||||||| || ||| | | ||||| | | ||||||||| Sbjct 229059 CTCTGACTTGAAATCATCAATGGTATTAAGATTCTCACCAACAAATTTGATTGTTGGAAA 229000 Query 101650 CGGTCTAGGAGTTCGCGTC--AACTGCATTTTAAGAGCATCAATGTGATCTACATAGATG 101707 || || | |||| || || || | || ||||| |||| |||| || ||| Sbjct 228999 TGGA-TATG-GTTCACGAACTAATTGTGTCTTTAGAGCTTCAACATGATTGCTGTAAATG 228942 Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 ||||||||||| ||||| || | ||| || || | | | | | | || | | Sbjct 228941 TGAGCATCTCCAATAGTGTGAACAAAATCACCTGCTTCCAATCCACATATTTTTGCTAGC 228882 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCC--CATATCAG 101825 || ||| | |||||| || |||||| || || || ||||| | || ||| || Sbjct 228881 ATATGAGTCAGAAGAGAGTAAGAAGCAATATTGAAAGGAACTCCAAGTCCTACATCTCCA 228822 Query 101826 CTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATA 101885 ||| | |||||||| ||||||| | || |||||| |||||||||||| || Sbjct 228821 CTG--CGTTGATACAATTGACAGCTTAACTCTCCATCTTGAACATAAAATTGAACCAAAG 228764 Query 101886 CATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACA 101945 ||| || || || | |||||| | || || ||| |||||| || | | | | Sbjct 228763 TATGGCATGGAGGGAGAACCATTAAATCAAGATCAGAAGGATTCCATGCTGATAAGATTA 228704 Query 101946 TCCTTC---TATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAA 102002 | |||| |||| ||||| |||| || ||||| | ||| ||||| |||| Sbjct 228703 TTCTTCGAGAATCT---GGGTTATTTTTAATTTGATCAACAACCTGAGCCAATTGATCAA 228647 Query 102003 CTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACT 102062 |||| | |||| | |||||| |||| |||| ||||| ||||| ||||| ||||| | Sbjct 228646 CTCCCTTTCCTGTGTAATCGGCATCAACTCCTTCATATTTAGCTCCAAAATGTCTCCATT 228587 Query 102063 GAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTA 102122 ||||||| || || || || | |||||| || || || ||| ||||| ||||| | Sbjct 228586 GAAATCCGTAAACTGGACCTAAATCTCCCTCTGGTCGTTCTGTAAATCCAAGATTATCCA 228527 Query 102123 AAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGC--TGATAGCTCTTT 102180 | ||| |||| ||||| | |||||||| | || || | | | | | | ||| Sbjct 228526 AGAATTGTCTACTACCATTAGGTTCCCAAATCTTGACACCCTTTTCAGTCAAAAC-CTTC 228468 Query 102181 GCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATAC 102240 || | |||| || ||||||||||||| ||||||||||| ||| |||||||| Sbjct 228467 GC-ATTAGTACTACCAGAAATAAACCACAACAATTCTTCAACAATCCCTTTCCAAAATGT 228409 Query 102241 TCTCTTAGTAGT 102252 |||||| || || Sbjct 228408 TCTCTTTGTTGT 228397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361243231024310