Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq15 693 0.0 seq5 542 3e-149 seq39 223 4e-53 >seq15 Length=622252 Score = 693 bits (768), Expect = 0.0 Identities = 1450/2138 (68%), Gaps = 53/2138 (2%) Strand=Plus/Minus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 || ||| | || | || || |||||||| || |||| ||| | ||||||| | ||| Sbjct 204878 GCTGGTCTTGTTCTTAAGTAATACATTCCAGTCTTTAAACCACGTTTCCATCCATGGAAA 204819 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948 |||||| | | || ||| | || | ||||| ||| | ||| | |||||| | Sbjct 204818 TGCATAGAACTACATACGGCATATGTTGGTTTTGCTACATGAAGATTAAGTGATTGAGAT 204759 Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 ||||| ||| | ||||| | || |||||||| | ||||| |||||| | ||||||| Sbjct 204758 TGATCAATGTAAGCTCCACGATCAGCAGCCATCTCAATGATATCCTTTTGAGAAATTTCC 204699 Query 53009 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATAGAT 53065 |||| ||| ||||||| | ||| |||| | ||| | | |||| ||||| || Sbjct 204698 CAAACAGTCTTATAAAGTTCCTTGATATGTGTTGGTATTCCAGCGATATTTTGAATTGAA 204639 Query 53066 CCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 53125 ||| || | ||||| |||| | | || ||| |||| || || || | ||| Sbjct 204638 CCATTATTTGATATAATTTCATTCATAACTTCTTCACTCCACAAGTTAAGGTCAATCAAA 204579 Query 53126 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 53185 || |||| ||||| |||||||| | ||| || |||||||| | || | || || | Sbjct 204578 TCTTTAAGAAGATGAGGATTAACAATTTGGAAGTCTCCAGAGAGAACACGACGTGTAAAT 204519 Query 53186 ATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 53245 |||||| ||||| ||||| | ||| |||||||| || | |||||| ||||| || ||| Sbjct 204518 ATATTAGAAGTATATGGTTCAATAGATTCATTATTCCCTAGAATTTGGGCAGTAGAAGCA 204459 Query 53246 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTT 53303 || ||||| || || | || | |||||| | ||| ||| | | ||||| || | Sbjct 204458 GTTGGCATTGGAGCTAATAAAAGGGAATTTCTTACACC--ATGCTTGGCAATTTTTTCCT 204401 Query 53304 TTAGAGGTTCCCAATTCCA-AAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGA 53362 | | |||||| ||| ||| | | ||| || ||||| | Sbjct 204400 TCAATTTAGCCCAATCCCATAAGTTACTT-GGTGTTACATTCCACATATCATATTGTAAA 204342 Query 53363 ATACCGTTA----CTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGC 53418 || || ||| |||| | |||| |||||| || |||||||| ||||| |||| Sbjct 204341 ATTCCTTTAGAAACTGGTG----ATCCATGATATGTTTCATATGGTCCATCCTTAGCAGC 204286 Query 53419 TAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAG 53478 || ||| || ||||| || || || | |||||| ||||| || || |||||||| || Sbjct 204285 TAATTCGCAGGAAGCCTCCAAAGCTCCATGATAAATAGTTTCAAAAATTTTCTTATTAAG 204226 Query 53479 ATCTTGTGCTTCCAGGCTATCA-AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 53537 |||| || | ||| || |||||||| | | || ||||| || ||||||| Sbjct 204225 TTCTTTGGCC-CGAGGAGATGTGAATGGATATCTCATAAGCATAAAACAATCAGCTAATC 204167 Query 53538 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 53597 ||||||||||||| || || || | |||||| || || | | || || || | || Sbjct 204166 CTTGAACACCAATTCCAATGGGGCGATGTCTAAAGTTTGATTTCTTTGCCTCAGGTACAG 204107 Query 53598 GATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTA-CTTTGACCACATCC 53656 |||||||||| | ||| ||||||||||| | ||| | ||| | ||| || ||| Sbjct 204106 GATAATAATTGACATCAATAATTTTATTCAAATTTTTAGCAAGAATCTTAGAA-ACAAGA 204048 Query 53657 TTCAGTTTGAGAAAATCAAAT------TGTCCATC-----TATTA-CAAACATGTTCAAT 53704 | |||| ||||| |||| || || | ||| | | || | |||||| Sbjct 204047 TGAAGTTGATTAAAATTAAATGATGGTTGCCCTTTCTCAATATCAACGAATCTATTCAAT 203988 Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 53764 ||||| ||| | | ||||||||| || || |||| | | | ||||| | || ||| Sbjct 203987 GCAATTGATCCTAAATTACAAACAGCAACTTCATCTGGAGCACAATATTCAACAATTTCA 203928 Query 53765 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 53824 || ||||||||| ||| || || ||||| || |||||||||||||| ||| | ||||| Sbjct 203927 GTACAAAGATTAGAACATTTAATTGTTCCCAAGTTTTGTTGATTACTTTTTCTATTACAA 203868 Query 53825 GCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTC 53884 |||||| |||| || |||| || |||||||| || || ||| |||| || | Sbjct 203867 TGATCCTTGTAAACCATATATGGAGTTCCAGTTTCTATTTGACTTTCACAAATCTTTTGC 203808 Query 53885 CAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATAC 53944 || | || | |||||| ||| | |||| | ||| || | || || ||| ||| Sbjct 203807 CAAATAACCCTAGCCTTGATTTGTTTTCTGTAACGCTTCTCAGTCTCATACTTTGTGTAC 203748 Query 53945 AATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATC 54004 ||| |||||| || || |||||| || || ||||| |||||||||| ||||||||| Sbjct 203747 AATTTTTCAAATTCATCCCCCCAACAATCTTCTAATCCTGGACATTCATGAGGACACATC 203688 Query 54005 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 54064 || ||||| | | || | | || ||||||||||| | |||||||| ||| | | | Sbjct 203687 AATGACCAATATGAATCTTTTTCAACACGTTTCATAAACAAATCAGGAACCCATAAACC- 203629 Query 54065 ATA-AATAGATCTCTGGTTCTATGTTCCTCGTTT---CCTGTATTCTTTTTAAGATCGAG 54120 ||| |||| ||| | | | ||||||| | | |||||||| || |||||||| | Sbjct 203628 ATAGAATAAATCACGAGCAC---GTTCCTCTTCTGGTCCTGTATTTTTCTTAAGATCCAA 203572 Query 54121 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTT 54180 || |||||||||| | |||||| |||||||| || || | | | ||||||| | || Sbjct 203571 AAATTCCATAATATCTGCATGCCATGGTTCCAAATAAATTGCAAAAGCTCCAGGTCTCTT 203512 Query 54181 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 54240 ||||| || ||||| | ||||| || || || || |||||||||||||||| | | Sbjct 203511 ATTTCCACCTTGATCAACATATCTTGCAGTATTGTTGAAAACTCTCAACATTGGTACCAA 203452 Query 54241 ACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT 54300 ||||| |||| ||||| || || ||| | |||| ||||||||||| | || Sbjct 203451 TCCATTTGATGTTCCATTAGTTCCACCAATAAATGATCCATTGGCACGAATACAATGAAC 203392 Query 54301 TGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 54360 || || || || || || ||| || ||||| || ||| |||| || |||||||| Sbjct 203391 ATTTAATCCAATACCTCCAGCAGATTTTGAAATTAAAGCACATTGTTTCAATGTATCATA 203332 Query 54361 GATGCCCTCTATACTATCATCCATCA--TGTTAAGTAGAAAACAGCTAGACATTTGGTGA 54418 || || || ||| ||| |||| | |||||| ||||| || ||||| ||| || Sbjct 203331 AATCCCTTCAATAGAATC-TCCAGCCATTGTTAATAAGAAA-CATGAAGACAATTGTGGA 203274 Query 54419 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGT 54478 ||| | ||||| |||||||||| || |||||||| || ||||||||||| | || | Sbjct 203273 CGAGTTGTTCCTGCATTAAATAGTGTTGGAGAAGCATGTGTAAACCATTTCTGTGACATA 203214 Query 54479 AGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGC 54538 | |||||| || |||||| |||| || ||||| | |||||| || || || || | | Sbjct 203213 AAATTGTATGTTTCGATAACTGAATCAATATCTTCTCCATGAATACCAACAGCAACTCTC 203154 Query 54539 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTT 54598 || | | || || ||||||||| | || || ||||| ||||| | | || || | Sbjct 203153 ATAAGTAAATGTTGTGGTCTTTCAGCAATTTTCTTGTTGATTTTTAAAAGATAAGAACGT 203094 Query 54599 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAG 54658 || |||||||| || ||||| | ||| |||||||| || |||| ||| | || Sbjct 203093 TCTAAAGTTTTGAATCCAAAGAATGAGTAGTCAAAGTCTCTGTCATAAACGATAGCAGAA 203034 Query 54659 TTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGA--AATAATCGGAG 54716 || ||||| || || ||| | || ||||| || | ||| | ||| || || | Sbjct 203033 TTAAGTTTGTCAGCATGTTTTTGAATTACATTGTATGT--TTCTTCACTAATCATTGGTG 202976 Query 54717 AATGTTTCCCATTTTTAGGATTGAC-ATAGTTAAATAAATCCTTCATCACTTCACTAAAT 54775 |||| ||| | || || ||| ||| | | | | || |||| ||||| ||| Sbjct 202975 TATGTACACCAGTAATATCAT-GACGATAATGATACAGGTCACTCATAACTTCTGAGAAT 202917 Query 54776 AGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAA 54835 ||| ||||||| ||| || | || || | || ||||| || || | ||| |||||| Sbjct 202916 GTTTTCTTTGTTTGTTTATGCATGTTGGAGATAGCGATTCTTGCTGCCAAAATAGCATAA 202857 Query 54836 TCCGGATGTTGTGTAGTACAAGTG-GCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTAC 54894 || ||||| |||| || || || |||||| | || || | || | |||||||| || Sbjct 202856 TCAGGATGAAGTGTTGT-CATGTTTGCTGCTGTCTCTGCGGCAAGGTTATCCAATTCAAC 202798 Query 54895 CGTTGTTACTCCATTATATATTCCTTGGATAACCTTCA 54932 || | || || || |||| ||||||||||| |||| Sbjct 202797 GGTAGAAACACCTTTGTATAAACCTTGGATAACTTTCA 202760 >seq5 Length=1449561 Score = 542 bits (600), Expect = 3e-149 Identities = 1422/2142 (66%), Gaps = 71/2142 (3%) Strand=Plus/Minus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 || |||||||| | || ||| ||||| || ||||||| ||| || |||||||| |||| Sbjct 1213746 GCTGGTTTCGTTCTTAAATAATACATCCCTGTTTTTAAACCAAGTTTCCATCCGCGAAAA 1213687 Query 52889 TGCAT---ACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGA 52945 || || ||| || | | || | || | ||||| || ||||| | |||||| Sbjct 1213686 TGTATGGAACTACATATTCCGTAAGAT---GGTTTTGCTACATAAATATTAAGAGATTGG 1213630 Query 52946 CTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATT 53005 |||||| || || ||||| || ||||||||||| | ||||| |||||| | ||| Sbjct 1213629 GATTGATCAATAAATGCTCCTCTATCTGCAGCCATATCAATGATGTCCTTTTGAGATATT 1213570 Query 53006 TCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGTATTCTGA---AT 53061 ||||| | || ||||| || || |||||||| ||||||| | || | || || Sbjct 1213569 TCCCATACGGTCTTATACAAATC-CTTAATATGATCTGGAATTCCTTTAATATGTTTTAT 1213511 Query 53062 AGATCCACCATC-TACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGG 53120 ||||||| || || |||| || | || ||||||||||| || ||| || Sbjct 1213510 AGATCCATTATAATAAATTAATTGGTTTAATAAT-TCATCATTCCACAAATTTAATTCAA 1213452 Query 53121 TTAAAAC-TCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGA 53179 ||| | | ||| || || || || || |||||||| |||||||||||||| | | Sbjct 1213451 CCAAATCGTGTAAA-AGGTGTGGGTTTACCACTTGAAAATCTCCAGACAATACCCGTCTC 1213393 Query 53180 GTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTT 53239 | || | ||| ||||| ||||| | ||||||||||| || ||||||||||||||| Sbjct 1213392 ATATACAAATTTGAAGTATAAGGTTCAAATGACTCATTATTACCAAAAATTTGAGCAGTT 1213333 Query 53240 GATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTA 53299 ||||| || ||||| || || ||||| || |||||| | ||| ||| |||| ||||| Sbjct 1213332 GATGCTGTTGGCATTGGAGCTACCAACAATGAATTTCTTATACCATATTTTCTAATTTTT 1213273 Query 53300 TCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGT 53359 ||||||| | ||||| ||| | || || ||| |||| Sbjct 1213272 TCTTTTAATAATGACCAATCCCATAAATTACTTGGAGTAACTTTCCATAAATCATATTGT 1213213 Query 53360 AGAATACCGTTACTGGCGTAC----GATCCTACATATGTATCGTATGGTCCTTCCTTCTC 53415 | ||| || || | ||| || ||| |||| || || || || || | | || Sbjct 1213212 AAAATGCC---ACGAGA-TACAAGAGAACCTTCATAAGTTTCATAAGGACCATATTCTTC 1213157 Query 53416 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 53475 ||||| |||||| || || |||||||| | ||| || ||||| || || || || || Sbjct 1213156 AGCTAATTCACATGAAGCTTCCAATGCACCATGATATATTGTTTCAAATATTTTTTTGTT 1213097 Query 53476 TAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 53535 || ||||| |||| | | | ||||| |||| || ||||| | ||||| || Sbjct 1213096 TAAATCTTTAGCTTGTGAAGAAGCGTAGGGATATCTTAAAAGTATAAAAGTATCTGCCAA 1213037 Query 53536 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 53595 ||||||||||||||| || ||||| | |||| || |||| || || || |||| | Sbjct 1213036 TCCTTGAACACCAATGCCAATAGGACGATGTTTCATATTTGATATACGAGTTTCTTCTAA 1212977 Query 53596 AGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTG----ACAATT-----ACTTT 53646 ||||||||||| |||||||| || ||||| | ||| | | | || | ||| Sbjct 1212976 TGGATAATAATTTATATCTATTATCTTATTCAAATTTTTTGTTAAAAGTTTAGTAATTTT 1212917 Query 53647 GACCACATCCTTCAGTTTGA--GAA--AATCAAATTGTCCATCTATT---ACAAACATGT 53699 | | | || | |||| ||| |||| || | ||| || ||||| | | Sbjct 1212916 GTGAAGTTGTTTAAAATTGAATGAAGTAATCCCAT----CTTCTTTTTCAACAAATCTAT 1212861 Query 53700 TCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTA 53759 | || ||||||||| ||| ||||| || || | ||||| | | | |||||| | | Sbjct 1212860 TTAAAGCAATAGATCCCAAGTTACATACAGCGATTTCATTTGAAGAAGAATATTGAACAA 1212801 Query 53760 TCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGT 53819 | || || || | ||| ||| || ||| |||||||||| | ||||||||| || | Sbjct 1212800 TTTCTGTACATAAATTTGAACATTTTATGATTCCTAAATTATTTTGATTACTTTTACGAT 1212741 Query 53820 TACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCG 53879 |||| ||| ||||||| ||| | || || ||||||||||| || ||| || Sbjct 1212740 TACAATGATCTTTATAAACCATGTAAGGTGTTCCAGTTTCAATTTGACTTTCACATATTT 1212681 Query 53880 CTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTG 53939 || ||||| | || ||||| ||| | | | || | ||||| |||| ||| Sbjct 1212680 TTTGCCAGAGCATTCGTGCCTTGATTTGACTTCTATAACGTTTTTCATTTTCATATTTAA 1212621 Query 53940 TATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 53999 ||| || |||||| || ||||||||| ||| || | || |||||||| | |||| Sbjct 1212620 CATATAAAGTTTCAAATTCTTCTCCCCAACTATTATCAAGACCTGGACATTCGTGAGGAC 1212561 Query 54000 ACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAA 54058 ||||||| ||||| | || | ||| || ||||||||||| | |||||||| ||| Sbjct 1212560 ACATCAATGACCAATAAGAATC-CCTTTCAACACGTTTCATAAATAAATCAGGAACCCAT 1212502 Query 54059 AGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT---TTCCTGTATTCTTTTTAAGA 54115 | | | ||||| ||| | | | ||||||| | |||||||| || |||||| Sbjct 1212501 AAACCATAAAATAAATCACGAG---CACGTTCCTCTTCCGGACCTGTATTTTTCTTAAGA 1212445 Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175 | | || | |||||| | |||||| ||||| | || || | | |||| || Sbjct 1212444 TTTAAAAATTGAAAAATATCTGCATGCCATGGTTCAATATAAATAGCAAATGCTCCTGGT 1212385 Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235 | ||| ||||| || ||||| | || | ||| || | |||| | |||| ||||| ||| Sbjct 1212384 CTTTTATTTCCACCTTGATCAACATAACGAGCAGTATCATTAAATACTCGTAACATAGGA 1212325 Query 54236 A-TAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 54294 | |||| ||||| || ||||| || || ||| | ||| ||||||||||||| Sbjct 1212324 ACTAAT-CCATTTGAAATTCCATTTGTTCCACTAATAAAAGATCCTGTGGCACGAATATT 1212266 Query 54295 ACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 54354 | ||| |||||| | || ||||| ||| || |||| || || ||| | || Sbjct 1212265 ATTAACACTTAGACCAACTCCACCTGCACCTTTTGAAATTATAGCACAATTTTTAAGAGT 1212206 Query 54355 ATCATAGATGCCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTT 54413 |||||| || || ||||| |||||||| || |||||| || |||||| |||| || Sbjct 1212205 ATCATAAATACCTTCTATTGAATCATCCACCATTGTTAA-TAAAAAACATGATGACAATT 1212147 Query 54414 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 54473 | ||||| |||||| |||| || || || || || ||||||||||| || Sbjct 1212146 GTCCTTTTGGTGTTCCTGCATTATATAATGTTGGTGATGCATGTAAAAACCATTTTTGAG 1212087 Query 54474 AAAGTAGA-TTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 54532 | | || | || || || || | | || || ||||| | |||||| || || || Sbjct 1212086 ACA-TACAGTTATATGTTTCAAGTACAGATTCAATATCTTCTCCATGAATACCAACAGCA 1212028 Query 54533 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAG 54592 |||||||| || | || || ||||||||||| || | | || ||| | | ||| || Sbjct 1212027 ACACGCATAAAAAGATGTTGTGGTCTTTCAACAATACAGCTATTAATTCTTAACAAATAT 1211968 Query 54593 GATTTTTCCAAAGTTTTAAAACCAAA-ATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||| |||||| |||||||||||||| | ||| || || |||| || | | || Sbjct 1211967 GATCGTTCCAACGTTTTAAAACCAAAGAAAGTAAAATTGTAA-TCTCTTTTATGATCGAT 1211909 Query 54652 AACTGAGTTGAGTTTATCCTTATATTTGT---TAACTACATCCATGGTAATACTTGAAAT 54708 |||| | | | | || |||| ||| | ||| || || | | ||| ||| Sbjct 1211908 TGCTGAATCTAATATTTCTTTATGTTTTTGAATAATTAAATTAGTTTTTTCACT---AAT 1211852 Query 54709 AATCGGAGAATG---TTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCAC 54765 ||| ||| ||| ||| |||||| ||| | || ||| | || | ||| || Sbjct 1211851 AATTGGACTATGTCTTTTTGTATTTTT---ATTTATATTATTATACAATCTATCCATAAC 1211795 Query 54766 TTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAG 54825 || ||| | || || |||| ||| || | |||||| | || ||||||| || | Sbjct 1211794 TTTTGAAAAAACTTCTTCCGTTTGTTTATGCATATTTGAAATAGCAATTCTAGAAGCCAA 1211735 Query 54826 AATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTC 54885 |||| ||||||| |||||| ||| | | | || || | ||| |||| | | || Sbjct 1211734 AATGCCATAATCAGGATGTATAACAGTTCTATTAGCAGCAACTTCAGCTGCTAAGTTATC 1211675 Query 54886 CAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 54927 | ||| || || ||||| || ||||||| |||||| | ||| Sbjct 1211674 AAGTTCAACAGTAGTTACACCTTTATATAATCCTTGAACAAC 1211633 >seq39 Length=206625 Score = 223 bits (246), Expect = 4e-53 Identities = 542/811 (67%), Gaps = 14/811 (2%) Strand=Plus/Plus Query 23786 TCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAG---ACATAACTCCCAT 23842 || |||||| ||| |||| || | |||| | ||||||| || ||||||| ||||| Sbjct 48598 TCATTAAAAATCAGCATCCAAGGTAAAAGTACGTTCTTCTTCAGTGCACATAAC-CCCAT 48656 Query 23843 TT-TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATAT 23901 | |||| |||||| || ||||| || ||||| || || ||||| | ||| | | Sbjct 48657 ATCTTTGATATTCAGAAACTTTCTTTTCAAAGAAATTTGTCTTTCCTTCAATTGAAAGGT 48716 Query 23902 TTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAA 23961 || |||||||||| ||||||| |||| ||||| ||| || | | ||||| | Sbjct 48717 TTACCATGAAATCAAATGGATTTTTAACCTTATAAATTTTTGGCATGTTTAGTTCAGTTA 48776 Query 23962 TCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAA 24021 | ||| || ||| | || || || || ||| | | ||||||| || || | Sbjct 48777 AAAGGTGATCAGCAACATATTCAATGTAGGTACACATTAATCTTGAATTCATACCAATCA 48836 Query 24022 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 24081 | ||| |||||||| |||| | | |||| | ||||| ||| || | | | || | Sbjct 48837 TATCAACAGGAAGAGCATCAGTTAAATATTCCTTCTCAATTTCGACAGCATTTCTAATTA 48896 Query 24082 TAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 24139 | || | || ||| || |||| || | | || ||||||| | ||| || Sbjct 48897 TT--TCATGCACACGCTCTACAGACGGTTTATTCTCAAGATAACTAAACATGAGACAAGC 48954 Query 24140 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 24199 ||||| | |||| || || ||||| |||||||| || ||| | || || Sbjct 48955 AAAATCTCTATGTAATCCTTCATCTCTGGAGATTAATTCATTTGAATGACACAAACCTGG 49014 Query 24200 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 24259 ||||| ||||| ||||| | |||||| || || ||||| || ||||| || || ||||| Sbjct 49015 CATTAATCCACGTTTTTTTAACCAAAAGATTGAAGCAAAAGAACCAGAGAAAAATATTCC 49074 Query 24260 TTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCAT-GT--ATCCA 24316 ||| || || ||||| ||||||| | ||||||| || || | | || || ||||| Sbjct 49075 TTCAACAGCGGCAAAAGCAATAATACGTTCTCCAAAAGATGCATTCTTATCGTTAATCCA 49134 Query 24317 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT-ATAGCATTAAAGA 24375 || ||||||||| |||||||| || | | || || ||| | | |||||| || | Sbjct 49135 TCTTAAAGCCCAATCAGCCTTCTTCTTGATA-AATTCAAACTCTGTTAAAGCATTGAAAA 49193 Query 24376 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 24435 | | ||| |||||| | | || | |||||| ||||| || |||||| || Sbjct 49194 GCTTATTTCTTTCATCAGTGTCACGGATATATGTTTCAATTAACTTGGAATACATCTCAC 49253 Query 24436 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 24495 |||||| || || || || ||||||||||| || || | | || || | | || | Sbjct 49254 TATGAATATTCTCCATAGCAATTTGAAATCCATAAAAGAAACGTGCTTCAGGGACTTGGA 49313 Query 24496 CTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 24555 ||||| | |||||| ||| | ||||||||||| || ||||| || || ||||| | Sbjct 49314 CTTCTTTTGAAAATCTTTCAACCAAATTTTCATTGACAATTCCATCGGAAGCAGCAAAGA 49373 Query 24556 ACGCCAATACATGTTTTATAAAATATTTTTC 24586 | || | ||| | |||||| ||| |||| Sbjct 49374 AGGCTAGGACACGAGATATAAAGTATCTTTC 49404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593708167048800