Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq858 172 6e-38 >seq858 Length=1962 Score = 172 bits (190), Expect = 6e-38 Identities = 211/288 (73%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 145688 GCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCT 145747 |||||| ||||| || || | ||| ||||| || | | ||||| ||| || || |||| Sbjct 1639 GCTCCAGATGGTTCAGATACAGGTGGGCGTCGCCGAAGGTGTGGACGAAATCGCCCGGCT 1698 Query 145748 CGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGG 145807 | || ||| || | ||| | ||||| || ||||||| |||| ||| |||||||| | Sbjct 1699 CCAGCCCCACGACCTTGGCCAGCATGTGCGTGAGCAGGGCGTAGGAGGCGATGTTGAACG 1758 Query 145808 GCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCG 145867 ||||||| || || || | ||||| || |||||||||||| |||| ||| | | Sbjct 1759 GCACCCCTAGGAACACATCGGCTGAGCGTTGATACAGCTGGCAGCTCAGCTTTCCGTCGG 1818 Query 145868 CCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCG 145927 | ||| |||| ||| ||||| ||||||||||||||| |||||| || || || |||| Sbjct 1819 CGACGAAGAATTGGAACAGGCAGTGGCAGGGCGGCAGCGCCATGTCGTCCACATCGGCCG 1878 Query 145928 GGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGA 145975 ||||||||||| ||| || | | | | ||| | ||| || |||||| Sbjct 1879 GGTTCCAGGCGCTGACGATGTGGCGGCGGCTGTTGGGATTGGTCTTGA 1926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590063449512400