Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_001824.1 Length=102653 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 3e-13 >seq5 Length=1449561 Score = 89.7 bits (98), Expect = 3e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 12780 AATGGTCATGCGACTAGGAAAGGCATGTGGGTTAATGATTAAATCAGGTACTATGCCATC 12839 ||| ||||| ||| || | ||||| || ||||| || | ||| ||| || || || Sbjct 1209609 AATTGTCATTCGAGATGGTACAGCATGAGGATTAATAATAATATCTGGTGATAAACCTTC 1209550 Query 12840 TTTAGTGAAAGGCATGTTTTCTTGGGCATAAATCATACCACAGGTACCTTTTTGTGCGGT 12899 ||| || || ||||| | ||||||| ||| |||||||| |||||||||||| | Sbjct 1209549 TTTTGTAAATGGCATATCTTCTTGGCGATACATCATACCCATGGTACCTTTTTGACCATG 1209490 Query 12900 AAAAGAAGCAAATTTATCTCCTATTTCAGGTA 12931 |||||||||||||||||| |||| |||| Sbjct 1209489 TCTAGAAGCAAATTTATCTCCAATTTGTGGTA 1209458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328357556477740