Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq547 87.8 1e-12 seq29 87.8 1e-12 >seq547 Length=3469 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 25111 TCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTG 25170 ||||| ||| ||| ||||| |||||| | || ||| |||||| | ||||| |||| Sbjct 1517 TCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAACAACGTCTTATTTTTG 1458 Query 25171 CGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTA 25230 | || || ||| | |||||| | |||| | | ||||| ||||||||||| ||||| | Sbjct 1457 CTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAATATTCAAAAAGAATCAA 1398 Query 25231 CTCTTCACATGGT 25243 | |||||| |||| Sbjct 1397 CCCTTCACTTGGT 1385 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | || || || || || ||||| ||||| ||| ||||| | Sbjct 1822 AATGCAAATTTTTGTTAAGACTTTAACTGGAAAAACAATTACTCTTGAAGTTGAACCATC 1763 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | |||| || ||| || |||||||| | || |||||| Sbjct 1762 TGACACTATCGACAACGTCAAATCCAAGATTCAAGACAAAGAAGGAATCCCACCAGATCA 1703 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||| | ||||||||||| || |||||| | |||||| | |||| | | || ||||| Sbjct 1702 ACAACGTCTTATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAA 1643 Query 25214 TATTCAAAAGGAATCTACTCTTCA 25237 || |||||||| || ||||| || Sbjct 1642 CATCCAAAAGGAGTCAACTCTCCA 1619 >seq29 Length=268433 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 25111 TCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTG 25170 ||||| ||| ||| ||||| |||||| | || ||| |||||| | ||||| |||| Sbjct 198466 TCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAACAACGTCTTATTTTTG 198407 Query 25171 CGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTA 25230 | || || ||| | |||||| | |||| | | ||||| ||||||||||| ||||| | Sbjct 198406 CTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAATATTCAAAAAGAATCAA 198347 Query 25231 CTCTTCACATGGT 25243 | |||||| |||| Sbjct 198346 CCCTTCACTTGGT 198334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410787738079340