Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq24 154 1e-32 >seq24 Length=311514 Score = 154 bits (170), Expect = 1e-32 Identities = 477/728 (66%), Gaps = 15/728 (2%) Strand=Plus/Minus Query 96898 TAAACAGCCATGGGCATTTTTATGCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTCA 96957 ||||||||||| ||| || || | || | | || || ||||| |||| ||||| Sbjct 229118 TAAACAGCCATTTCCATCTTGATTGTTGGATGACACTTGTAATTTTCTAGAACAATGTTC 229059 Query 96958 TTTGCTTTAAAATCATCAATAGATGCAA---TCTTTCTGGCAAACTTTAGTGTTGGGAAA 97014 | || || ||||||||||| | || ||| | |||| || | |||||| || Sbjct 229058 TCTGACTTGAAATCATCAATGGTATTAAGATTCTCACCAACAAATTTGATTGTTGGAAAT 228999 Query 97015 GGCCTGGGAGTTCGCGTA--AGCTGC-TCTGTGAGAGCATCAATGTGATTCACATAAATG 97071 || || ||| || | | || ||| | ||||| |||| ||||| |||||| Sbjct 228998 GGATATGG--TTCACGAACTAATTGTGTCTTT-AGAGCTTCAACATGATTGCTGTAAATG 228942 Query 97072 TGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATC 97131 ||||||||||| | |||||||| ||| || || | | || || | | || | | Sbjct 228941 TGAGCATCTCCAATAGTGTGAACAAAATCACCTGCTTCCAATCCACATATTTTTGCTAGC 228882 Query 97132 ATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCC--CATATCAG 97189 ||| ||| | ||||| || |||||| || ||||| || || ||||| ||| || Sbjct 228881 ATATGAGTCAGAAGAGAGTAAGAAGCAATATTGAAAGGAACTCCAAGTCCTACATCTCCA 228822 Query 97190 CTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATA 97249 ||| | |||||| || |||||| | || |||||| |||||||| ||| ||| Sbjct 228821 CTG--CGTTGATACAATTGACAGCTTAACTCTCCATCTTGAACATAAAATTGAACCAAAG 228764 Query 97250 CATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACA 97309 ||| || || || | ||||| || ||| | |||||| || | | | | Sbjct 228763 TATGGCATGGAGGGAGAACCATTAAATCAAGATCAGAAGGATTCCATGCTGATAAGATTA 228704 Query 97310 TTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGC 97369 |||||| | |||||| | | || || || | ||| ||||||||||| | Sbjct 228703 TTCTTCGAGAATCTGGGTTATTTTTAATTTGATCAACAACCTGAGCCAATTGATCAACTC 228644 Query 97370 CTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGA 97429 | | ||| |||| | | || |||| ||||| ||||||||||| |||||||| | Sbjct 228643 CCTTTCCTGTGTAATCGGCATCAACTCCTTCATATTTAGCTCCAAAATGTCTCCATTGAA 228584 Query 97430 ATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAAT 97489 |||| ||||| || || | ||||| ||| || || || ||||| ||||| || Sbjct 228583 ATCCGTAAACTGGACCTAAATCTCCCTCTGGTCGTTCTGTAAATCCAAGATTATCCAAGA 228524 Query 97490 AGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTG-CAAGCTCTTTGCTG 97548 | ||| ||||| | |||||||| | ||||| | | | ||| ||| || Sbjct 228523 ATTGTCTACTACCATTAGGTTCCCAAATCTTGACACCCTTTTCAGTCAAAACCTTCGC-A 228465 Query 97549 TCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTC 97608 | |||| || |||||||||||||||||||| |||| ||| |||||||| |||| Sbjct 228464 TTAGTACTACCAGAAATAAACCACAACAATTCTTCAACAATCCCTTTCCAAAATGTTCTC 228405 Query 97609 TTAGTTGT 97616 || ||||| Sbjct 228404 TTTGTTGT 228397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346776350161700