Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq24 215 8e-51 seq547 134 2e-26 seq29 134 2e-26 >seq24 Length=311514 Score = 215 bits (238), Expect = 8e-51 Identities = 425/625 (68%), Gaps = 8/625 (1%) Strand=Plus/Minus Query 205327 TTTAATT-TTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTAATATG 205385 ||| ||| |||||||||| | |||| ||| |||||||| | |||| | | || ||| Sbjct 229014 TTTGATTGTTGGAAATGGATATGGTTCACGAACTAATTGTGTCTTTAGAGCTTCAACATG 228955 Query 205386 ATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGT 205445 ||| || || || |||| |||||| | |||| ||| ||| || || || | Sbjct 228954 ATTGCTGTAAATGTGAGCATCTCCAATAGTGTGAACAAAATCACCTGCTTCCAATCCACA 228895 Query 205446 TAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAA 205505 || | ||| | ||||| ||||| | | ||| ||||| ||| || || || || | Sbjct 228894 TATTTTTGCTAGCATATGAGTCAGAAGAGAGTAAGAAGCAATATTGAAAGGAACTCCAAG 228835 Query 205506 ACC--CATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACA 205563 || ||| || ||| | |||||||| |||||| | | | | || | || || Sbjct 228834 TCCTACATCTCCACTG--CGTTGATACAATTGACAGCTTAACTCTCCATCTTGAA---CA 228780 Query 205564 TGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTC 205623 | |||||| || ||| ||| || || || | |||||| |||| ||| ||||||| Sbjct 228779 TAAAATTGAACCAAAGTATGGCATGGAGGGAGAACCATTAAATCAAGATCAGAAGGATTC 228720 Query 205624 CAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATATGT 205683 || |||| ||| ||||| ||| ||| || || |||||||| |||| || | || || Sbjct 228719 CATGCTGATAAGATTATTCTTCGAGAATCTGGGTTATTTTTAATTTGATCAACAACCTGA 228660 Query 205684 GTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCA 205743 | |||||||||| ||| | ||| |||| | ||| | | ||||||||| ||| Sbjct 228659 GCCAATTGATCAACTCCCTTTCCTGTGTAATCGGCATCAACTCCTTCATATTTAGCTCCA 228600 Query 205744 AAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAA 205803 ||||| | ||||||||| || ||||||||||||||||| || ||| || || |||| Sbjct 228599 AAATGTCTCCATTGAAATCCGTAAACTGGACCTAAATCTCCCTCTGGTCGTTCTGTAAAT 228540 Query 205804 CCACGtttttttatatattttaatgatccattttcatcccaaatatggattcctttattt 205863 ||| | || | | ||| | ||||| |||||||| | || || || | Sbjct 228539 CCAAGATTATCCAAGAATTGTCTACTACCATTAGGTTCCCAAATCTTGACACCCTTTTCA 228480 Query 205864 tttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCT 205923 | | || || | |||||| ||||| |||||||| || |||||||||||||| ||| Sbjct 228479 GTCAAAACCTTCGCATTAGTACTACCAGAAATAAACCACAACAATTCTTCAACAATCCCT 228420 Query 205924 CTCCAAAACATTGATTTTGTTGTAA 205948 ||||||| || |||||||||| Sbjct 228419 TTCCAAAATGTTCTCTTTGTTGTAA 228395 >seq547 Length=3469 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| |||| || || || || ||| | ||| ||||| | Sbjct 1593 ATGCAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCC 1534 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | || || ||||||||||| |||||||| || || || ||| Sbjct 1533 GATACTATTGACAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAA 1474 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | ||||||||||| ||||| ||| | || ||| | |||| | ||||||||| Sbjct 1473 CAACGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAAT 1414 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||||||||||||||| | || |||||| | ||| | || ||||| Sbjct 1413 ATTCAAAAAGAATCAACCCTTCACTTGGTTCTCCGTCTTCGTGGTGG 1367 >seq29 Length=268433 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| |||| || || || || ||| | ||| ||||| | Sbjct 198542 ATGCAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCC 198483 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | || || ||||||||||| |||||||| || || || ||| Sbjct 198482 GATACTATTGACAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAA 198423 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | ||||||||||| ||||| ||| | || ||| | |||| | ||||||||| Sbjct 198422 CAACGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAAT 198363 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||||||||||||||| | || |||||| | ||| | || ||||| Sbjct 198362 ATTCAAAAAGAATCAACCCTTCACTTGGTTCTCCGTCTTCGTGGTGG 198316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755438907808000