Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq10 107 4e-18 seq1 89.7 9e-13 >seq10 Length=1029713 Score = 107 bits (118), Expect = 4e-18 Identities = 129/173 (75%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 135651 TATAGAACTTAGGAGATGGGCGGATGTTTTTATTATAGCGCCCTTAACGGCAAATACGTT 135710 || ||| ||| | | |||||| |||| || | || || || ||| |||||||| | Sbjct 660941 TAAAGAGCTTCGTAAATGGGCAGATGCACTTGTAATTGCACCATTAGATGCAAATACAAT 661000 Query 135711 AGCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGA 135770 || ||||| || ||||| || || |||||||| || || || | |||||||| ||||| Sbjct 661001 GGCTAAAATGGCAAATGGGATTTGTGATAATTTGCTTACATCGTTAGTAAGAGCATGGGA 661060 Query 135771 TACAAACAAACCACTCATTTTCTG-TCCTGCAATGAATACTCTTATGTGGGAA 135822 || || |||||| | ||||| || ||| ||||||||||| |||||||||| Sbjct 661061 TAATAATAAACCATT-ATTTTTTGCTCCAGCAATGAATACATGTATGTGGGAA 661112 >seq1 Length=6158768 Score = 89.7 bits (98), Expect = 9e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 42509 ATAATTTGAGCTATCCTATCACCCTTACATACATTAAATTGAGTTGATCCGAAGTTAAAT 42568 |||| ||||||||| |||||| |||| |||| ||| | | | ||||||||| Sbjct 2063170 ATAAATTGAGCTATTCTATCATTCTTATTGACATGAAAATCATCGTCACTAAAGTTAAAT 2063229 Query 42569 AATAAAACGCCCACGTTTCCTCTATAGTCTGAGTCAATTACGCCAGCACCTACGTCTATA 42628 |||||||| || ||| | ||| || || | ||| || ||||| ||||| ||| Sbjct 2063230 AATAAAACATGGACAACTCCACGATAATCACTATCGACTACACCTGCACCAACGTCAATA 2063289 Query 42629 AAATAATTATAAGCAAGCCCCGATCTAGGAGCTATTCTACCGTAGTATCCGTTAGGTATT 42688 |||| || |||| | ||| |||| |||||| | ||| ||||| || || || |||||| Sbjct 2063290 AAATTTTTTGAAGCTAACCCAGATCGAGGAGCAACTCTCCCGTAATAACCTTTGGGTATT 2063349 Query 42689 TTTA 42692 | || Sbjct 2063350 TGTA 2063353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923175912672400