Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq547 105 1e-17 seq29 105 1e-17 >seq547 Length=3469 Score = 105 bits (116), Expect = 1e-17 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | | ||||| || | || |||||||| ||||||||||| | Sbjct 1365 TTCCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAG 1424 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||||| | ||| || | ||| |||||||||||||| | | ||| || || |||| Sbjct 1425 AAAGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAG 1484 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | || ||||| |||||||| |||||| ||| ||| | Sbjct 1485 GGATACCTTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAA 1544 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 | || || |||||||| || || ||||| || |||| || || ||||| Sbjct 1545 CCTCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 1593 >seq29 Length=268433 Score = 105 bits (116), Expect = 1e-17 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | | ||||| || | || |||||||| ||||||||||| | Sbjct 198314 TTCCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAG 198373 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||||| | ||| || | ||| |||||||||||||| | | ||| || || |||| Sbjct 198374 AAAGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAG 198433 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | || ||||| |||||||| |||||| ||| ||| | Sbjct 198434 GGATACCTTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAA 198493 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 | || || |||||||| || || ||||| || |||| || || ||||| Sbjct 198494 CCTCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 198542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743509577715200