Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq641 91.5 1e-13 >seq641 Length=2967 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||| | || || | |||||| | || || || ||||| || ||||| || | Sbjct 509 CCGCCGC-CGGCGGCAAAATCAGGTGGAGCGTGCTCTCCTTCTGGATATTGTAATCAGCA 451 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG-GG 34281 ||| || |||| |||||| || || ||||| | || |||||||||| || | || Sbjct 450 AGCGTGCGCCCGTCTTCCAACAGCACTCCAGCGAAGACCAGGCGCTGCTGGT-GAGGAGG 392 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| ||||| ||| | || | ||||||||| ||| || || Sbjct 391 GATGCCTTCCTTGTCTTGGATCTTCGCCTTCACGGCGTCGATCGAATCGCTCGGCTCCAC 332 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGC 34392 || | | ||||| |||||||| || || || || |||||||||||||| Sbjct 331 CTCAAGGGCAATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATCGC 281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323064873233600