Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq39 251 7e-62 >seq39 Length=206625 Score = 251 bits (278), Expect = 7e-62 Identities = 539/792 (68%), Gaps = 24/792 (3%) Strand=Plus/Plus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT- 15944 |||||||||| ||| | | ||| | |||| || | | ||||||| ||| | Sbjct 48601 TTAAAAATCAGCATCCAAGGTAAAAGTACGTTCTTCTTCAGTGCACATAACCC-CATATC 48659 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||||||||| |||| ||||||||||||||||||| |||||||| | ||||| ||| Sbjct 48660 TTTGATATTCAGAAACTTTCTTTTCAAAGAAATTTGTCTTTCCTTCAATTGAAAGGTTTA 48719 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTA-TTTATCGCATCCCAATTCCAACAAT 16063 |||| |||||||| |||||||| ||| || | ||| | |||| | | || | Sbjct 48720 CCATGAAATCAAATGGATTTTT--AACCTTATAAATTTTTGGCATGTTTAGTTCAGTTAA 48777 Query 16064 AATCT-ATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAA 16122 || | ||| || ||| |||| || || |||||| | ||||| || || | Sbjct 48778 AAGGTGATCAGCAACATATTCAATGTAGGTACACATTAATCTTGAATTCATACCAATCAT 48837 Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT 16182 | |||||| | || || |||||| | | || || || | || || | | ||||| Sbjct 48838 ATCAACAGGAAGAGCATCAGTTAAATATTCCTTCTCAATTTCGACAGCATTTCTAATTAT 48897 Query 16183 ATCTCTTACTACACTATTTAACGGAGGGTTTAAT---AAG-TGTTTAAACATTATACAAG 16238 || || || || | || || |||||| | ||| | ||||||| | ||||| Sbjct 48898 TTCATGCAC-ACGCTCT---ACAGACGGTTTATTCTCAAGATAACTAAACATGAGACAAG 48953 Query 16239 CAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTG 16298 ||||||| | ||| |||||||| || || ||||| || |||||| | ||||| Sbjct 48954 CAAAATCTCTATGTAATCCTTCATCTCTGGAGATTAATTCATTTGAATGACACAAACCTG 49013 Query 16299 GCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATAC 16358 |||||| ||| |||||||| | |||||| || | ||||| |||||||| || ||||| | Sbjct 49014 GCATTAATCCACGTTTTTTTAACCAAAAGATTGAAGCAAAAGAACCAGAGAAAAATATTC 49073 Query 16359 CTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatcc 16418 ||||||| |||||||| |||| | || || || | | | ||| ||| | |||| Sbjct 49074 CTTCAACAGCGGCAAAAGCAATAATACGTTCTCCAAAAGATGCATTCTTATCGTTAATCC 49133 Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCT-CTATTGCATTAAAT 16477 || || |||||||| || || | || | | | |||| ||| || ||||| || Sbjct 49134 ATCTTAAAGCCCAATCAGCCTTCTTCTTGATA-AATTCAAACTCTGTTAAAGCATTGAAA 49192 Query 16478 AAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACT----ATACAT 16533 | | |||| |||| | | || ||||| || || ||| |||| |||||| Sbjct 49193 AGCTTATTTCTTTCATCAGTGTCACGGATATATGTTTCAATT----AACTTGGAATACAT 49248 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593 || ||||||||||||||| || || ||||| ||||||||| | | ||||| | | Sbjct 49249 CTCACTATGAATATTCTCCATAGCAATTTGAAATCCATAAAAGAAACGTGCTTCAGGGAC 49308 Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 ||| ||||| |||| ||||| | || ||||| || || ||||||||| ||| || Sbjct 49309 TTGGACTTCTTTTGAAAATCTTTCAACCAAATTTTCATTGACAATTCCATCGGAAGCAGC 49368 Query 16654 AAAAAACGCAAG 16665 ||| || || || Sbjct 49369 AAAGAAGGCTAG 49380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462501535666000