Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq24 197 1e-45 >seq24 Length=311514 Score = 197 bits (218), Expect = 1e-45 Identities = 409/603 (68%), Gaps = 12/603 (2%) Strand=Plus/Plus Query 20070 ATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGGTTTATTAAAGGATCAACAAATTCTAC 20129 |||||||||||| |||||||||| || || ||||||||| || || ||| | | Sbjct 228411 ATTTTGGAAAGGGATTGTTGAAGAATTGTTGTGGTTTATTTCTGGTAGTACTAATGCGA- 228469 Query 20130 CGAGCTTGTA---GAAAAAGGAGTTAAGATTTGGAGCGCACATGGATCTAAGCAATTTTT 20186 || || | ||||| || || ||||||||| | |||| || ||||| || Sbjct 228470 --AGGTTTTGACTGAAAAGGGTGTCAAGATTTGGGAACCTAATGGTAGTAGACAATTCTT 228527 Query 20187 ACACAGCAATGGATTTGACA-ACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTC 20245 | | ||||||| ||| | || | |||||| ||||| ||||| || || ||||||| Sbjct 228528 GGATAATCTTGGATTT-ACAGAACGACCAGAGGGAGATTTAGGTCCAGTTTACGGATTTC 228586 Query 20246 AATGGAGACATTTTGGAGCTGAATATGTTGACATGAACACAAATTATTTTGGACAAGGAG 20305 |||||||||||||||||||| |||||| | | | | |||| ||| | |||| Sbjct 228587 AATGGAGACATTTTGGAGCTAAATATGAAGGAGTTGATGCCGATTACACAGGAAAGGGAG 228646 Query 20306 TAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTA 20365 | |||||||| | ||| || || |||||||| |||||| | ||||||| | Sbjct 228647 TTGATCAATTGGCTCAGGTTGTTGATCAAATTAAAAATAACCCAGATTCTCGAAGAATAA 228706 Query 20366 TTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGC 20425 | |||| || ||||| || ||| | |||||||| | | |||||||| |||| | Sbjct 228707 TCTTATCAGCATGGAATCCTTCTGATCTTGATTTAATGGTTCTCCCTCCATGCCATA--C 228764 Query 20426 TATG--CCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGC 20483 | || |||||||| ||| || || || |||||| |||||||||| | Sbjct 228765 TTTGGTTCAATTTTATGTTCAAGATGGAGAGTTAAGCTGTCAATTGTATCAACGCAGTGG 228824 Query 20484 TGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGAT 20543 ||| | ||||| || ||||||||||||||||| ||| | || || || ||||| | Sbjct 228825 AGATGTAGGACTTGGAGTTCCTTTCAATATTGCTTCTTACTCTCTTCTGACTCATATGCT 228884 Query 20544 TGCACATGTTACAGATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATAT 20603 ||| | | | || || | ||||| || || ||||| || ||||| || || || Sbjct 228885 AGCAAAAATATGTGGATTGGAAGCAGGTGATTTTGTTCACACTATTGGAGATGCTCACAT 228944 Query 20604 TTACCTTAATCATATAGAACCTTTAAAATTACAGTTAACACGACAACCAAAACAATTCCC 20663 |||| |||||| | ||| || |||| ||| ||| || ||||| | | ||| || Sbjct 228945 TTACAGCAATCATGTTGAAGCTCTAAAGACACAATTAGTTCGTGAACCATATCCATTTCC 229004 Query 20664 AAC 20666 ||| Sbjct 229005 AAC 229007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399175194250450