Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq39 242 4e-59 >seq39 Length=206625 Score = 242 bits (268), Expect = 4e-59 Identities = 533/784 (68%), Gaps = 16/784 (2%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTT-T 13914 ||||||||| |||| || | |||| | || |||| | | ||||| ||||| | | Sbjct 48602 TAAAAATCAGCATCCAAGGTAAAAGTACGTTCTTCTTCAGTGCACATAAC-CCCATATCT 48660 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 |||||||||| |||| | ||||||||||| || || || ||||| | ||| | ||| | Sbjct 48661 TTGATATTCAGAAACTTTCTTTTCAAAGAAATTTGTCTTTCCTTCAATTGAAAGGTTTAC 48720 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCT-AGTTCTAATAGTA 14033 ||| ||||||||||||||| || || | | | ||| | || | ||||| || | Sbjct 48721 CATGAAATCAAATGGATTT-TTAACCTTATAAATTTTTGGCATGTTTAGTTCAGTTAAAA 48779 Query 14034 ATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 14093 ||| |||| | ||||| || | ||||||| |||||||||| || | | Sbjct 48780 GGTGATCAGCAACATATTCAATGTAGGTACACATTAATCTTGAATTCATACCAATCATAT 48839 Query 14094 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 14153 ||||||| || |||||| |||| || || || ||||| | || |||| | Sbjct 48840 CAACAGGAAGAGCATCAGTTAAATATTCCTTCTCAATTTCGACAGCAT---TTCTAATTA 48896 Query 14154 TCGTA---ATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 14210 | | | | || ||| || || | |||| |||| || | ||| |||| Sbjct 48897 TTTCATGCACACGCTCTACAGACGGTTTATTCTCAAGATAACTAAACATGAGACAAGCAA 48956 Query 14211 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 14270 |||| | ||| | || |||||||| || | ||| |||||| || ||||||| Sbjct 48957 AATCTCTATGTAATCCTTCATCTCTGGAGATTAATTCATTTGAATGACACAAACCTGGCA 49016 Query 14271 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 14330 | ||||| ||||||||||||||||| |||| ||| || || || || || |||||||| | Sbjct 49017 TTAATCCACGTTTTTTTAACCAAAAGATTGAAGCAAAAGAACCAGAGAAAAATATTCCTT 49076 Query 14331 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT-ATCCAT 14389 |||| || ||||| || || | ||||||||||| ||||| || || ||| | |||||| Sbjct 49077 CAACAGCGGCAAAAGCAATAATACGTTCTCCAAAAGATGCATTCTT-ATCGTTAATCCAT 49135 Query 14390 TTTCTAGCCCATTCAGAtttttttttAATAAAATC-CATTGTTTCAATAGCATT-AAATA 14447 || |||||| |||| || || || ||||| || | | | | || |||||| ||| Sbjct 49136 CTTAAAGCCCAATCAGCCTTCTTCTTGATAAATTCAAACTCTGTTAA-AGCATTGAAAAG 49194 Query 14448 AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14507 | || ||| || | ||| || ||||| ||||| | | |||||| ||| Sbjct 49195 CTTATTTCTT-TCATCAGTGTCACGGATATATGTTTCAATTAACTTGGAATACATCTCAC 49253 Query 14508 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTA 14567 || || || |||||||| || ||||| |||||||| | | ||||| | ||| | Sbjct 49254 TATGAATATTCTCCATAGCAATTTGAAATCCATAAAAGAAACGTGCTTCAGGGACTTGGA 49313 Query 14568 CCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAA 14627 | ||| |||||||||| ||||||||||||| || || ||||| ||| ||||| | Sbjct 49314 CTTCTTTTGAAAATCTTTCAACCAAATTTTCATTGACAATTCCATCGGAAGCAGCAAAGA 49373 Query 14628 ATGC 14631 | || Sbjct 49374 AGGC 49377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482334686930800