Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq24 203 6e-47 >seq24 Length=311514 Score = 203 bits (224), Expect = 6e-47 Identities = 382/554 (69%), Gaps = 6/554 (1%) Strand=Plus/Plus Query 35234 ACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGC 35293 || || |||| || || |||| ||| |||| |||||| | | |||||| || || Sbjct 228397 ACAACAAAGAGAACATTTTGGAAAGGGATTGTTGAAGAATTGTTGTGGTTTATTTCTGGT 228456 Query 35294 AATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCG 35353 | ||| | || || | ||| | | ||| | | || ||| | ||||||| Sbjct 228457 AGTACTAATGCGAAGGTTTTGACTGAAAAGGGTGTCAAGATTTGGGAACCTAATGGTAGT 228516 Query 35354 CGGGAATTTTTGGACAGTAGAGGGTTATAC-GATAGAGCAGAGGGAGATTTGGGACCCGT 35412 | |||| ||||| | | || || ||| || || ||||||||||||| || || || Sbjct 228517 AGACAATTCTTGGATAATCTTGGATT-TACAGAACGACCAGAGGGAGATTTAGGTCCAGT 228575 Query 35413 ATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTT-CCGATTATA 35471 |||||||| |||||| | |||||||| ||| ||||||| | ||| | ||||||| | Sbjct 228576 TTACGGATTTCAATGGAGACATTTTGGAGCTAAATATGA-AGGAGTTGATGCCGATTACA 228634 Query 35472 CTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAAAATCCAGATG 35531 | |||||||| ||||||||||||| | | | | | | | | || |||||| Sbjct 228635 CAGGAAAGGGAGTTGATCAATTGGCTCAGGTTGTTGATCAAATTAAAAATAACCCAGATT 228694 Query 35532 ATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTC 35591 | |||| || || | | |||||||||||| |||||| | | |||| ||| |||| Sbjct 228695 CTCGAAGAATAATCTTATCAGCATGGAATCCTTCTGATCTTGATTTAATGGTTCTCCCTC 228754 Query 35592 CATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATC 35651 ||||||| | | |||||||||||| ||||||| || || || ||||||| Sbjct 228755 CATGCCATACTTTGGTTCAATTTTATGTTCAAGATGGAGAGTTAAGCTGTCAATTGTATC 228814 Query 35652 AGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGA 35711 | || || |||||||| || | || || || ||||||||||| || ||||||||||||| Sbjct 228815 AACGCAGTGGAGATGTAGGACTTGGAGTTCCTTTCAATATTGCTTCTTACTCTCTTCTGA 228874 Query 35712 CTCATCTGATGGCCAGTAT-GGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGT 35770 ||||| || | || | || |||| | | || | || || ||| | | |||| |||| Sbjct 228875 CTCATATGCTAGCAAAAATATGTGGAT-TGGAAGCAGGTGATTTTGTTCACACTATTGGA 228933 Query 35771 GACGCACACATTTA 35784 || || |||||||| Sbjct 228934 GATGCTCACATTTA 228947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989561050928550