Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq15 699 0.0 seq5 583 1e-161 seq39 205 1e-47 seq1 86.0 8e-12 >seq15 Length=622252 Score = 699 bits (774), Expect = 0.0 Identities = 1451/2139 (68%), Gaps = 55/2139 (3%) Strand=Plus/Minus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || ||| | || | || || |||||||| || |||| ||| | ||||||| | ||| Sbjct 204878 GCTGGTCTTGTTCTTAAGTAATACATTCCAGTCTTTAAACCACGTTTCCATCCATGGAAA 204819 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 |||||| | | || ||| | || | ||||| ||| | ||| | |||||| | Sbjct 204818 TGCATAGAACTACATACGGCATATGTTGGTTTTGCTACATGAAGATTAAGTGATTGAGAT 204759 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 ||||| ||| | ||||| | || |||||||| | ||||| |||||| | ||||||| Sbjct 204758 TGATCAATGTAAGCTCCACGATCAGCAGCCATCTCAATGATATCCTTTTGAGAAATTTCC 204699 Query 62247 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGAT 62303 |||| ||| ||||||| | ||| |||| | ||| | | |||| ||||| || Sbjct 204698 CAAACAGTCTTATAAAGTTCCTTGATATGTGTTGGTATTCCAGCGATATTTTGAATTGAA 204639 Query 62304 CCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 62363 ||| || | ||||| |||| | | || ||| |||| || || || | ||| Sbjct 204638 CCATTATTTGATATAATTTCATTCATAACTTCTTCACTCCACAAGTTAAGGTCAATCAAA 204579 Query 62364 ACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAA 62423 || |||| ||||| || ||||| | |||||| |||||||| | || | || || | Sbjct 204578 TCTTTAAGAAGATGAGGATTAACAATTTGGAAGTCTCCAGAGAGAACACGACGTGTAAAT 204519 Query 62424 ATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 62483 |||||| ||||| ||||| | || |||||||| || | |||||| ||||| || ||| Sbjct 204518 ATATTAGAAGTATATGGTTCAATAGATTCATTATTCCCTAGAATTTGGGCAGTAGAAGCA 204459 Query 62484 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTT 62541 || ||||| || || | || | |||||| | ||| ||| | | ||||| || | Sbjct 204458 GTTGGCATTGGAGCTAATAAAAGGGAATTTCTTACACC--ATGCTTGGCAATTTTTTCCT 204401 Query 62542 TTAGATGTTCCCAATTCCA-AAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGA 62600 | | | |||||| ||| ||| | | ||| ||| |||||||| | Sbjct 204400 TCAATTTAGCCCAATCCCATAAGTTACTT-GGTGTTACATTCCACATATCATATTGTAAA 204342 Query 62601 ATACCGTTA----CTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGC 62656 || || ||| |||| | |||| |||||| ||||||||||| ||||| |||| Sbjct 204341 ATTCCTTTAGAAACTGGTG----ATCCATGATATGTTTCATATGGTCCATCCTTAGCAGC 204286 Query 62657 TAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAG 62716 || || || ||||| || || || | |||||| |||||||| || |||||||| || Sbjct 204285 TAATTCGCAGGAAGCCTCCAAAGCTCCATGATAAATAGTTTCAAAAATTTTCTTATTAAG 204226 Query 62717 ATCTTGTGCTTCCG-GGCTATCA-AATGGATAATTTAAGAGAATAAACGCGTCCGCTAAT 62774 |||| || ||| || || |||||||| | | || ||||| || |||||| Sbjct 204225 TTCTTTGGC--CCGAGGAGATGTGAATGGATATCTCATAAGCATAAAACAATCAGCTAAT 204168 Query 62775 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62834 |||||||||||||| || || || | |||||| || || | | || || || | | Sbjct 204167 CCTTGAACACCAATTCCAATGGGGCGATGTCTAAAGTTTGATTTCTTTGCCTCAGGTACA 204108 Query 62835 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTA-CTTTGACCACATC 62893 ||||||||||| | ||| ||||||||||| | |||| | ||| | ||| || ||| Sbjct 204107 GGATAATAATTGACATCAATAATTTTATTCAAATTTTTAGCAAGAATCTTAGAA-ACAAG 204049 Query 62894 CTTCAGTTTGAGAAAATCAAATC------GCCCATC-----TATTA-CAAACATGTTCAA 62941 | |||| ||||| |||| |||| | ||| | | || | ||||| Sbjct 204048 ATGAAGTTGATTAAAATTAAATGATGGTTGCCCTTTCTCAATATCAACGAATCTATTCAA 203989 Query 62942 TGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 63001 ||||| ||| | | |||||| || || || |||| | | | ||||| | || || Sbjct 203988 TGCAATTGATCCTAAATTACAAACAGCAACTTCATCTGGAGCACAATATTCAACAATTTC 203929 Query 63002 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63061 ||| ||||||||| ||| || || ||||| || |||||||||||||| ||| | ||||| Sbjct 203928 AGTACAAAGATTAGAACATTTAATTGTTCCCAAGTTTTGTTGATTACTTTTTCTATTACA 203869 Query 63062 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63121 |||||| |||| || ||||||| |||||||| || ||| ||| |||| || Sbjct 203868 ATGATCCTTGTAAACCATATATGGAGTTCCAGTTTCTATTTGACTTTCACAAATCTTTTG 203809 Query 63122 CCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATA 63181 ||| | || | |||||| ||| | |||| | | | || | || || || || Sbjct 203808 CCAAATAACCCTAGCCTTGATTTGTTTTCTGTAACGCTTCTCAGTCTCATACTTTGTGTA 203749 Query 63182 CAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACAT 63241 |||| ||| || || || |||||| || || |||| |||||||||| |||||||| Sbjct 203748 CAATTTTTCAAATTCATCCCCCCAACAATCTTCTAATCCTGGACATTCATGAGGACACAT 203689 Query 63242 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 63301 ||| ||||| | | || | | || ||||||||||| | |||||||| ||| | | | Sbjct 203688 CAATGACCAATATGAATCTTTTTCAACACGTTTCATAAACAAATCAGGAACCCATAAACC 203629 Query 63302 TATA-AATAGATCTCTTGTTCTATGTTCCTCGTTT---CCTGTATTCTTTTTAAGATCGA 63357 ||| |||| ||| | | | ||||||| | | |||||||| || |||||||| | Sbjct 203628 -ATAGAATAAATCACGAGCAC---GTTCCTCTTCTGGTCCTGTATTTTTCTTAAGATCCA 203573 Query 63358 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63417 || |||||||||| | |||||| |||||||| || || || | | ||||||| | | Sbjct 203572 AAAATTCCATAATATCTGCATGCCATGGTTCCAAATAAATTGCAAAAGCTCCAGGTCTCT 203513 Query 63418 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63477 | ||||| || ||||| | ||||| || || || || |||||||||||||||| | | Sbjct 203512 TATTTCCACCTTGATCAACATATCTTGCAGTATTGTTGAAAACTCTCAACATTGGTACCA 203453 Query 63478 TACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAA 63537 || |||||| | ||||| || || ||| | |||| ||||||||||| | || Sbjct 203452 ATCCATTTGATGTTCCATTAGTTCCACCAATAAATGATCCATTGGCACGAATACAATGAA 203393 Query 63538 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCAT 63597 || || || || || || ||| || ||||| || ||| |||| || || |||| Sbjct 203392 CATTTAATCCAATACCTCCAGCAGATTTTGAAATTAAAGCACATTGTTTCAATGTATCAT 203333 Query 63598 AGATGCCTTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGA 63656 | || ||||| || ||| | ||| ||||| ||||| || ||||| ||| || Sbjct 203332 AAATCCCTTCAATAGAATCTCCAGCCATTGTTAATAAGAAA-CATGAAGACAATTGTGGA 203274 Query 63657 CGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGT 63716 ||||| ||||| |||||||||| || |||||||| || ||||||||||| | || | Sbjct 203273 CGAGTTGTTCCTGCATTAAATAGTGTTGGAGAAGCATGTGTAAACCATTTCTGTGACATA 203214 Query 63717 AGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGC 63776 | |||||| || || ||| |||| || ||||| | |||||| || || || || | | Sbjct 203213 AAATTGTATGTTTCGATAACTGAATCAATATCTTCTCCATGAATACCAACAGCAACTCTC 203154 Query 63777 ATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTT 63836 || | | || || ||||||||| ||||||| ||||| ||||| || | || || | Sbjct 203153 ATAAGTAAATGTTGTGGTCTTTCAGCAATTTTCTTGTTGATTTTTAAAAGATAAGAACGT 203094 Query 63837 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAA 63896 || |||||||| || ||||| | ||| |||||||| || |||| ||| | ||| Sbjct 203093 TCTAAAGTTTTGAATCCAAAGAATGAGTAGTCAAAGTCTCTGTCATAAACGATAGCAGAA 203034 Query 63897 TTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTA--ATACTTGA--AATAATCGG 63952 || || || || || ||| | || || ||| ||| | ||| | ||| || || Sbjct 203033 TTAAGTTTGTCAGCATGTTTTTGAATTA----CATTGTATGTTTCTTCACTAATCATTGG 202978 Query 63953 AGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAA 64012 | |||| ||| | || || | ||| | | | || ||| ||||| || Sbjct 202977 TGTATGTACACCAGTAATATCATGACGATAATGATACAGGTCACTCATAACTTCTGAGAA 202918 Query 64013 TAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATA 64072 | ||| ||||||| || || | || || || || ||||| || || | ||| ||||| Sbjct 202917 TGTTTTCTTTGTTTGTTTATGCATGTTGGAGATAGCGATTCTTGCTGCCAAAATAGCATA 202858 Query 64073 ATCCGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTA 64131 ||| ||||| |||| || || | | |||||| | || || || || | |||||||| | Sbjct 202857 ATCAGGATGAAGTGTTGT-CATGTTTGCTGCTGTCTCTGCGGCAAGGTTATCCAATTCAA 202799 Query 64132 CCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCA 64170 | || | || || || |||| ||||| ||||| |||| Sbjct 202798 CGGTAGAAACACCTTTGTATAAACCTTGGATAACTTTCA 202760 >seq5 Length=1449561 Score = 583 bits (646), Expect = 1e-161 Identities = 1438/2146 (67%), Gaps = 79/2146 (4%) Strand=Plus/Minus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || |||||||| | || ||| ||||| || ||||||| ||| || |||||||| |||| Sbjct 1213746 GCTGGTTTCGTTCTTAAATAATACATCCCTGTTTTTAAACCAAGTTTCCATCCGCGAAAA 1213687 Query 62127 TGCAT---ACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGA 62183 || || ||| || | | || | || | ||||| || ||||| | |||||| Sbjct 1213686 TGTATGGAACTACATATTCCGTAAGAT---GGTTTTGCTACATAAATATTAAGAGATTGG 1213630 Query 62184 CTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATT 62243 |||||| || || ||||| || ||||||||||| | ||||| |||||| | ||| Sbjct 1213629 GATTGATCAATAAATGCTCCTCTATCTGCAGCCATATCAATGATGTCCTTTTGAGATATT 1213570 Query 62244 TCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGTATTCTGA---AT 62299 ||||| | || ||||| || || |||||||| ||||||| | || | || || Sbjct 1213569 TCCCATACGGTCTTATACAAATC-CTTAATATGATCTGGAATTCCTTTAATATGTTTTAT 1213511 Query 62300 GGATCCACCATC-TACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGG 62358 |||||| || || |||| || | || ||||||||||| || ||| || Sbjct 1213510 AGATCCATTATAATAAATTAATTGGTTTAATAAT-TCATCATTCCACAAATTTAATTCAA 1213452 Query 62359 TTAAAAC-TCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGA 62417 ||| | | ||| || || ||||| || ||||| || |||||||||||||| | | Sbjct 1213451 CCAAATCGTGTAAA-AGGTGTGGGTTTACCACTTGAAAATCTCCAGACAATACCCGTCTC 1213393 Query 62418 GTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTT 62477 | || | ||| ||||| ||||| | ||||||||||| || ||||||||||||||| Sbjct 1213392 ATATACAAATTTGAAGTATAAGGTTCAAATGACTCATTATTACCAAAAATTTGAGCAGTT 1213333 Query 62478 GATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTA 62537 ||||| || ||||| || || ||||| || |||||| | ||| ||| |||| ||||| Sbjct 1213332 GATGCTGTTGGCATTGGAGCTACCAACAATGAATTTCTTATACCATATTTTCTAATTTTT 1213273 Query 62538 TCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGT 62597 ||||||| | ||||| ||| | || || ||| ||||||| Sbjct 1213272 TCTTTTAATAATGACCAATCCCATAAATTACTTGGAGTAACTTTCCATAAATCATATTGT 1213213 Query 62598 AGAATACCGTTACTGGCGTAC----GATCCTACATATGTATCATATGGTCCTTCCTTCTC 62653 | ||| || || | ||| || ||| |||| || ||||| || || | | || Sbjct 1213212 AAAATGCC---ACGAGA-TACAAGAGAACCTTCATAAGTTTCATAAGGACCATATTCTTC 1213157 Query 62654 AGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATT 62713 ||||| || ||| || || |||||||| | ||| || |||||||| || || || || Sbjct 1213156 AGCTAATTCACATGAAGCTTCCAATGCACCATGATATATTGTTTCAAATATTTTTTTGTT 1213097 Query 62714 TAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAA 62773 || ||||| |||| | | | | ||||| |||| || ||||| | || || || Sbjct 1213096 TAAATCTTTAGCTTGTGAAGAAGCGTAGGGATATCTTAAAAGTATAAAAGTATCTGCCAA 1213037 Query 62774 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62833 ||||||||||||||| || ||||| | |||| || |||| || || || |||| | Sbjct 1213036 TCCTTGAACACCAATGCCAATAGGACGATGTTTCATATTTGATATACGAGTTTCTTCTAA 1212977 Query 62834 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG----ACAATT-----ACTTT 62884 ||||||||||| |||||||| || ||||| | |||| | | | || | ||| Sbjct 1212976 TGGATAATAATTTATATCTATTATCTTATTCAAATTTTTTGTTAAAAGTTTAGTAATTTT 1212917 Query 62885 GACCACATCCTTCAGTTTGA--GAA--AATCAAATCGCCCATCTATT---ACAAACATGT 62937 | | | || | |||| ||| |||| ||| ||| || ||||| | | Sbjct 1212916 GTGAAGTTGTTTAAAATTGAATGAAGTAATCCCATCT----TCTTTTTCAACAAATCTAT 1212861 Query 62938 TCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTA 62997 | || |||| |||| ||| ||||| || || | ||||| | | | |||||| | | Sbjct 1212860 TTAAAGCAATAGATCCCAAGTTACATACAGCGATTTCATTTGAAGAAGAATATTGAACAA 1212801 Query 62998 TCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGT 63057 | || || || | ||| ||| || || |||||||||| | ||||||||| || | Sbjct 1212800 TTTCTGTACATAAATTTGAACATTTTATGATTCCTAAATTATTTTGATTACTTTTACGAT 1212741 Query 63058 TACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCG 63117 |||| ||| ||||||| ||| | || || ||||||||||| ||| ||| || Sbjct 1212740 TACAATGATCTTTATAAACCATGTAAGGTGTTCCAGTTTCAATTTGACTTTCACATATTT 1212681 Query 63118 CTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTC--TTTCGTATAG 63175 || ||||| | ||| ||||| ||| || || ||| | ||| || |||| ||| Sbjct 1212680 TTTGCCAGAGCATTCGTGCCTTGATTT--GACTTCTATAACGTTTTTCATTTTCATATTT 1212623 Query 63176 AGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGG 63235 | ||| || ||| || || ||||||||| ||| || | | |||||||| | || Sbjct 1212622 AACATATAAAGTTTCAAATTCTTCTCCCCAACTATTATCAAGACCTGGACATTCGTGAGG 1212563 Query 63236 ACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCC 63294 ||||||||| ||||| | || | |||| | ||||||||||| | |||||||| || Sbjct 1212562 ACACATCAATGACCAATAAGAATCC-CTTTCAACACGTTTCATAAATAAATCAGGAACCC 1212504 Query 63295 AAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTT---CCTGTATTCTTTTTAA 63351 | | | | ||||| ||| | | | ||||||| | |||||||| || |||| Sbjct 1212503 ATAAACCATAAAATAAATCACGAGCAC---GTTCCTCTTCCGGACCTGTATTTTTCTTAA 1212447 Query 63352 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAG 63411 ||| | || | |||||| | |||||| ||||| | || || || | |||| | Sbjct 1212446 GATTTAAAAATTGAAAAATATCTGCATGCCATGGTTCAATATAAATAGCAAATGCTCCTG 1212387 Query 63412 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 63471 | | ||| ||||| || ||||| | || | ||| || | |||| | |||| ||||| | Sbjct 1212386 GTCTTTTATTTCCACCTTGATCAACATAACGAGCAGTATCATTAAATACTCGTAACATAG 1212327 Query 63472 GAA-TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATA 63530 ||| |||| || ||||| || ||||| || || ||| | ||| ||||||||||| Sbjct 1212326 GAACTAAT-CCATTTGAAATTCCATTTGTTCCACTAATAAAAGATCCTGTGGCACGAATA 1212268 Query 63531 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63590 ||| ||| |||||| | ||| ||||| ||| || |||| || || ||| | Sbjct 1212267 TTATTAACACTTAGACCAACTCCACCTGCACCTTTTGAAATTATAGCACAATTTTTAAGA 1212208 Query 63591 GTGTCATAGATGCCTTCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACAT 63649 || ||||| || |||||||| |||||| | || |||||| || |||||| |||| Sbjct 1212207 GTATCATAAATACCTTCTATTGAATCATCCACCATTGTTAA-TAAAAAACATGATGACAA 1212149 Query 63650 TTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 63709 ||| | ||||| |||||| |||| || || || || || ||||||||||| Sbjct 1212148 TTGTCCTTTTGGTGTTCCTGCATTATATAATGTTGGTGATGCATGTAAAAACCATTTTTG 1212089 Query 63710 AGAAAGTAGA-TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTG 63768 ||| | || | || || || |||| | || || ||||| | |||||| || || | Sbjct 1212088 AGACA-TACAGTTATATGTTTCAAGTACAGATTCAATATCTTCTCCATGAATACCAACAG 1212030 Query 63769 CGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGT 63828 | |||||||| || | || || |||||||||||||| | | || ||| | ||||| | Sbjct 1212029 CAACACGCATAAAAAGATGTTGTGGTCTTTCAACAATACAGCTATTAATTCTTAACAAAT 1211970 Query 63829 AGGATTTTTCCAAAGTTTTAAAACCAAA-ATAGTTGTATGAAAAGTCTCGTTCGTAAATA 63887 | ||| |||||| |||||||||||||| | ||| || || |||| || | | Sbjct 1211969 ATGATCGTTCCAACGTTTTAAAACCAAAGAAAGTAAAATTGTAA-TCTCTTTTATGATCG 1211911 Query 63888 ATAACCGAATTGAGCTTATCCTTATATTTGT---TAACTATATCCATGGTAATACTTGAA 63944 || | |||| | | || |||| ||| | ||| || || | | ||| | Sbjct 1211910 ATTGCTGAATCTAATATTTCTTTATGTTTTTGAATAATTAAATTAGTTTTTTCACT---A 1211854 Query 63945 ATAATCGGAGAATG---TTTCCCATTTTTAGGATTAACATAGTTGAATA-AATC-CTCCA 63999 ||||| ||| ||| ||| |||||| ||| | || || ||| |||| |||| Sbjct 1211853 ATAATTGGACTATGTCTTTTTGTATTTTT---ATTTATATTATT--ATACAATCTATCCA 1211799 Query 64000 TCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGG 64059 | |||| ||| | || || |||| || || | |||||| || || ||||| | | Sbjct 1211798 TAACTTTTGAAAAAACTTCTTCCGTTTGTTTATGCATATTTGAAATAGCAATTCTAGAAG 1211739 Query 64060 CTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAG 64119 | | |||| ||||||| |||||| ||| | | | || || | ||| ||||| | Sbjct 1211738 CCAAAATGCCATAATCAGGATGTATAACAGTTCTATTAGCAGCAACTTCAGCTGCTAAGT 1211679 Query 64120 TGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAAC 64165 | || | ||| || || ||||| || ||||||| |||||||| ||| Sbjct 1211678 TATCAAGTTCAACAGTAGTTACACCTTTATATAATCCTTGAACAAC 1211633 >seq39 Length=206625 Score = 205 bits (226), Expect = 1e-47 Identities = 537/810 (66%), Gaps = 12/810 (1%) Strand=Plus/Plus Query 33233 TCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAG---ACATAACTCCCAT 33289 || |||||| ||| |||| || | |||| | ||||||| || ||||||| ||||| Sbjct 48598 TCATTAAAAATCAGCATCCAAGGTAAAAGTACGTTCTTCTTCAGTGCACATAAC-CCCAT 48656 Query 33290 TT-TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATAT 33348 | |||| |||||| || ||||| || ||||| || |||||||| | ||| | | Sbjct 48657 ATCTTTGATATTCAGAAACTTTCTTTTCAAAGAAATTTGTCTTTCCTTCAATTGAAAGGT 48716 Query 33349 TTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAA 33408 || ||||||||||||| ||||| |||| || ||||||||| | | ||||| | Sbjct 48717 TTACCATGAAATCAAATGGATTTTTAACCTTATAAATTTTTGGCATGTTTAGTTCAGTTA 48776 Query 33409 TCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA 33468 | ||| || || |||| || || || ||| | | ||||||| || || | Sbjct 48777 AAAGGTGATCAGCAACATATTCAATGTAGGTACACATTAATCTTGAATTCATACCAATCA 48836 Query 33469 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 | ||| |||||||| |||| | | |||| | ||||| || |||||| | || | Sbjct 48837 TATCAACAGGAAGAGCATCAGTTAAATATTCCTTCTCAATTTCGACAGCATTTCTAATTA 48896 Query 33529 TAA-ATCTA-ACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGC 33586 | || | ||| | || || |||| || | || ||||||| | ||| || Sbjct 48897 TTTCATGCACACGCT--CTACAGACGGTTTATTCTCAAGATAACTAAACATGAGACAAGC 48954 Query 33587 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGG 33646 ||||| | || | || || ||||| |||||||| || ||| | || || Sbjct 48955 AAAATCTCTATGTAATCCTTCATCTCTGGAGATTAATTCATTTGAATGACACAAACCTGG 49014 Query 33647 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCC 33706 ||||| ||||| ||||| | |||||| || ||||| || || || || || || ||||| Sbjct 49015 CATTAATCCACGTTTTTTTAACCAAAAGATTGAAGCAAAAGAACCAGAGAAAAATATTCC 49074 Query 33707 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT-GT--ATCCA 33763 ||| || || ||||| ||||||| | |||||| || || | | || || ||||| Sbjct 49075 TTCAACAGCGGCAAAAGCAATAATACGTTCTCCAAAAGATGCATTCTTATCGTTAATCCA 49134 Query 33764 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823 || ||||||||| |||||||| || | | | | | | || ||||| || || Sbjct 49135 TCTTAAAGCCCAATCAGCCTTCTTCTTGATAAATTCAAACTCTGTTAAAGCATTGAAAAG 49194 Query 33824 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 33883 | ||| |||||| | | || | ||| || || || || |||||| || Sbjct 49195 CTTATTTCTTTCATCAGTGTCACGGATATATGTTTCAATTAACTTGGAATACATCTCACT 49254 Query 33884 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCAC 33943 |||||| || || || || || |||||||| || || | | || || | | || || Sbjct 49255 ATGAATATTCTCCATAGCAATTTGAAATCCATAAAAGAAACGTGCTTCAGGGACTTGGAC 49314 Query 33944 TTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAA 34003 |||| | |||||| ||| | ||||||||||| || |||||||| || ||||| || Sbjct 49315 TTCTTTTGAAAATCTTTCAACCAAATTTTCATTGACAATTCCATCGGAAGCAGCAAAGAA 49374 Query 34004 CGCCAATACATGTTTTATAAAATATTTTTC 34033 || | ||| | |||||| ||| |||| Sbjct 49375 GGCTAGGACACGAGATATAAAGTATCTTTC 49404 >seq1 Length=6158768 Score = 86.0 bits (94), Expect = 8e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 28699 ACCCAATTCCTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATAAAT 28758 ||| | ||||||||| | ||||| |||| |||||||||| || || || || | |||||| Sbjct 2809773 ACCAAGTTCCTTGACTTCAGTTAATGATTTCCAATCCATATTTGCACTACCAATATAAAT 2809832 Query 28759 ATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCC 28800 |||| | | |||| ||||||||||| ||||| | ||| || Sbjct 2809833 ATGTTTTTGATCAACAATCCAAAATTTCGTATGTAAAACACC 2809874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629803350376800