Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5 679 0.0 seq15 600 1e-166 seq39 228 8e-55 >seq5 Length=1449561 Score = 679 bits (752), Expect = 0.0 Identities = 1315/1913 (69%), Gaps = 57/1913 (3%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || |||| ||||||| |||||||| || | ||| ||||| | ||||||||| || ||| Sbjct 1213773 TCGACTGAAAATTTTACAGGATTTGCAGCTGGTTTCGTTCTTAAATAATACATCCCTGTT 1213714 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCAT---ACTGGTCAGTTTTGCGTATGTAGGA 36906 |||| || | | |||||||| |||||| || ||| || | || |||| | || Sbjct 1213713 TTTAAACCAAGTTTCCATCCGCGAAAATGTATGGAACTA--CA-TATTCCGTAAGATGGT 1213657 Query 36907 TTATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCC 36966 || ||| ||| || | | ||||| |||||| ||||| || ||||| || || ||| Sbjct 1213656 TTTGCTACATAAATATTAAGAGATTGGGATTGATCAATAAATGCTCCTCTATCTGCAGCC 1213597 Query 36967 ATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTA 37026 || || | || ||||||||||| ||||| || || ||||| | | || |||| | Sbjct 1213596 ATATCAATGATGTCCTTTTGAGATATTTCCCATACGGTCTTATACAAATCCTTAATATGA 1213537 Query 37027 TCTGGTAAATC---TAA-ATGTTGAATAGAACCATTATG-TAACACAATTGTATTCTTTA 37081 ||||| || || ||| ||||| ||||| ||||||| ||| ||||| || | | Sbjct 1213536 TCTGG-AATTCCTTTAATATGTTTTATAGATCCATTATAATAAATTAATTGGTTTAATAA 1213478 Query 37082 TGTCATTATTCCACATATTTCTACTT--ATTAGTTCTCTCAATAGGTGTGGATTTACAAC 37139 | |||| |||||||| |||| | || | | || || |||||||| ||||| || Sbjct 1213477 T-TCATCATTCCACAAATTT--AATTCAACCAAATCGTGTAAAAGGTGTGGGTTTACCAC 1213421 Query 37140 CTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGA 37199 |||||||||||||| ||||| | ||| |||| | ||| |||||| ||||||| || Sbjct 1213420 TTGAAAATCTCCAGACAATACCCGTCTCATATACAAATTTGAAGTATAAGGTTCAAATGA 1213361 Query 37200 CTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCT 37259 ||||||||||| || ||||||| || ||||| || |||||||| |||| | | Sbjct 1213360 CTCATTATTACCAAAAATTTGAGCAGTTGATGCTGTTGGCATTGGAGCTACCAACAATGA 1213301 Query 37260 ATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGT 37319 |||||| | |||| | | ||||| | | ||||| | |||||||||||||| | Sbjct 1213300 ATTTCTTATACCATATTTTCTAATTTTTTCTTTTAATAATGACCAATCCCATAAATTACT 1213241 Query 37320 TGGGTT--CTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTA 37377 ||| | |||| ||| | ||||||||||| ||| || | | ||||| | | | Sbjct 1213240 TGGAGTAACTTT--CCATAAATCATATTGTAAAATGCCACGAGATACAAGAGAACCTTCA 1213183 Query 37378 TATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAA 37437 || || |||||||| || || || ||||| ||| || || ||| | ||| ||| | Sbjct 1213182 TAAGTTTCATAAGGACCATATTCTTCAGCTAATTCACATGAAGCTTCCAATGCACCATGA 1213123 Query 37438 TATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAG 37497 ||||||||||| || |||| | | ||||| ||| |||| | | || | | ||| Sbjct 1213122 TATATTGTTTCAAATATTTTTTTGTTTAAATCTTTAGCTTGTGAAGAAGCGTAGGGATAT 1213063 Query 37498 CCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTC 37557 | || | |||||| ||| ||||| || |||||||| || || || || | ||||||| Sbjct 1213062 CTTAAAAGTATAAAAGTATCTGCCAATCCTTGAACACCAATGCCAATAGGACGATGTTTC 1213003 Query 37558 TTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGA 37617 |||| ||| || | |||| | |||||||||||| ||||||||||| ||||| | | Sbjct 1213002 ATATTTGATATACGAGTTTCTTCTAATGGATAATAATTTATATCTATTATCTTATTCAAA 1212943 Query 37618 TTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACAT------AAATA----- 37666 ||||| || | ||| |||||| || | || |||| || || || || Sbjct 1212942 TTTTTTGTTAAAAGTTTAGTAATT-TTGTGAAGTTGTTTAAAATTGAATGAAGTAATCCC 1212884 Query 37667 --CGTTATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTC 37724 | | || | ||||||| || | || | ||||||||| | ||||||||||| | ||| Sbjct 1212883 ATCTTCTTTTTCAACAAATCTATTTAAAGCAATAGATCCCAAGTTACATACAGCGATTTC 1212824 Query 37725 ATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAA 37784 || | | | |||| | ||| |||||||| | ||| || | || |||| || Sbjct 1212823 ATTTGAAGAAGAATATTGAACAATTTCTGTACATAAATTTGAACATTTTATGATTCCTAA 1212764 Query 37785 ATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTG 37844 ||| ||||||| ||| ||||||| ||||||||| | || || || ||||| Sbjct 1212763 ATTATTTTGATTACTTTTACGATTACAATGATCTTTATAAACCATGTAAGGTGTTCCAGT 1212704 Query 37845 TTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAA--CGATCGCTTTA 37902 ||| |||||| || || || ||| | ||| ||| || | || || || Sbjct 1212703 TTCAATTTGACTTTCACATATTTTTTGCCAGAGCATTCGTGCCTTGATTTGACTTCTATA 1212644 Query 37903 AtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCG 37962 | |||||| | |||| |||| | |||||| | | ||| || | ||||| || Sbjct 1212643 ACGTTTTTCAT--TTTCATATTTAACATATAAAGTTTCAAATTCTTCTCCCCAACTATTA 1212586 Query 37963 CATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGT 38022 | |||||||||||| |||||||| | ||||| | ||| |||| || ||| Sbjct 1212585 TCAAGACCTGGACATTCGTGAGGACACATCAATGACCAATAAGAATCCCTTTCAACACGT 1212526 Query 38023 TCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCG 38082 | ||||||||||||||| |||||||| || ||||||||| | | | ||||| Sbjct 1212525 TTCATAAATAAATCAGGAACCCATAAACCATAAAATAAATCACGAGCACGTTCCTCTTCC 1212466 Query 38083 TTCCCTACATTCTTTCTTAAGCTTAGAAAATCG-AATATATCAGCGTGCCATGGTTCTAT 38141 ||| ||| ||||||||| || ||||| | || ||||| || ||||||||||| || Sbjct 1212465 GGACCTGTATT-TTTCTTAAGATTTAAAAATTGAAAAATATCTGCATGCCATGGTTCAAT 1212407 Query 38142 ATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTT 38201 |||||| | | ||||||||||||||||| || || |||| || ||| | | | || | Sbjct 1212406 ATAAATAGCAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACATAACGAGCAGTATC 1212347 Query 38202 ATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATA 38261 |||| ||| || ||||||||| |||| ||||| || | || ||| | || ||| | Sbjct 1212346 ATTAAATACTCGTAACATAGGAACTAATCCATTTGAAATTCCATTTGTTCCACTAATAAA 1212287 Query 38262 AGTACCCTTAGCTCGTATATTACTTATCGAC--AATCCTATTCCACCTGCATGTTTTGAT 38319 || || | || || |||||| ||| | || | || | |||||||||| |||||| Sbjct 1212286 AGATCCTGTGGCACGAATATTA-TTAAC-ACTTAGACCAACTCCACCTGCACCTTTTGAA 1212229 Query 38320 ATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGT 38379 |||| ||| || | ||| | |||||| | ||||||||||| |||||| |||| | Sbjct 1212228 ATTATAGCACAATTTTTAAGAGTATCATAAATACCTTCTATTGAATCATCCACCATTGTT 1212169 Query 38380 AGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGAT 38439 | || |||||| |||| ||| ||| ||||| || ||| ||||||| || ||| Sbjct 1212168 AATAAAAAACATGATGACAATTGTCCTTTTGGTGTTCCTGCATTATATAATGTTGGTGAT 1212109 Query 38440 GCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCA 38499 ||||||| |||||||||| |||| | | ||||||||||| | |||| || ||||| Sbjct 1212108 GCATGTAAAAACCATTTTTGAGACATACAGTTATATGTTTCAAGTACAGATTCAATATCT 1212049 Query 38500 CCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTAT---T 38556 | || |||||||| | || || | ||| | | ||||||||||||||| | || Sbjct 1212048 TCTCCATGAATACCAACAGCAACACGCATAAAAAGATGTTGTGGTCTTTCAACAATACAG 1211989 Query 38557 TTATT-ATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATA 38615 |||| |||| |||| | ||| ||| ||| || ||||| | ||||| || || | Sbjct 1211988 CTATTAATTC---TTAA-CAAATATGATCGTTCCAACGTTTTAAAACCAAAGAAAGTAAA 1211933 Query 38616 TGAATAATCTCTATCGTATG--CTATTACATTATCGATTATATCTCTATGTTT 38666 |||||||| | |||| | ||| | ||| | ||| ||| ||||||| Sbjct 1211932 ATTGTAATCTCTTT--TATGATCGATTGCTGAATCTAATATTTCTTTATGTTT 1211882 >seq15 Length=622252 Score = 600 bits (664), Expect = 1e-166 Identities = 1247/1842 (68%), Gaps = 35/1842 (2%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| || || || |||| || || | | ||||||| | |||||||||||||| Sbjct 204905 TCAACGGTAAACTTAATAGCATCAACAGCTGGTCTTGTTCTTAAGTAATACATTCCAGTC 204846 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| || | ||||||| | ||||||||| | | || ||||| || || Sbjct 204845 TTTAAACCACGTTTCCATCCATGGAAATGCATAGAACTACATACGGCATATGTTGGTTTT 204786 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 ||| || | | | ||||||| |||||| || | || || | || || ||||| Sbjct 204785 GCTACATGAAGATTAAGTGATTGAGATTGATCAATGTAAGCTCCACGATCAGCAGCCATC 204726 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 || | ||| |||||||| || |||||||| || ||||| | || || |||| | Sbjct 204725 TCAATGATATCCTTTTGAGAAATTTCCCAAACAGTCTTATAAAGTTCCTTGATATGTGTT 204666 Query 37030 GGTAA---ATCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCA 37086 |||| | | | || |||||| |||||||||| | | | |||| |||| | | || Sbjct 204665 GGTATTCCAGCGATATTTTGAATTGAACCATTATTTGATATAATTTCATTCATAACTTCT 204606 Query 37087 TTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAA 37146 | | |||||| || || | ||| | | || || ||||| |||| || || Sbjct 204605 TCACTCCACAAGTTAAGGTCAATCAAATCTTTAAGAAGATGAGGATTAACAATTTGGAAG 204546 Query 37147 TCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTA 37206 |||||||| | || | | |||| ||||||| ||||||||||||||| || |||||| Sbjct 204545 TCTCCAGAGAGAACACGACGTGTAAATATATTAGAAGTATATGGTTCAATAGATTCATTA 204486 Query 37207 TTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTC 37266 || | || ||||| | ||||| ||||| |||||||| |||| || |||| |||||| Sbjct 204485 TTCCCTAGAATTTGGGCAGTAGAAGCAGTTGGCATTGGAGCTAATAAAAGGGAATTTCTT 204426 Query 37267 AATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG-GTT 37325 | ||||| | |||| | | || | || | |||||||||||| | |||| ||| Sbjct 204425 ACACCATGCTTGGCAATTTTTTCCTTCAATTTAGCCCAATCCCATAAGTTACTTGGTGTT 204366 Query 37326 -CTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCT 37384 | || ||||||||||||||||| ||| |||||| |||| || | | |||||| | Sbjct 204365 ACATT--CCACATATCATATTGTAAAATTCCTTTAGAAACTGGTGATCCATGATATGTTT 204308 Query 37385 CATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTG 37444 |||| ||||| | | ||||| |||||| || || | || ||| ||| || | Sbjct 204307 CATATGGTCCATCCTTAGCAGCTAATTCGCAGGAAGCCTCCAAAGCTCCATGATAAATAG 204248 Query 37445 TTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATC-GAATGCATAGCCCAAT 37503 |||| ||||||| |||| | | ||| || | | || ||||| ||| | || Sbjct 204247 TTTCAAAAATTTTCTTATTAAGTTCTTTGGCC-CGAGGAGATGTGAATGGATATCTCATA 204189 Query 37504 AATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTA 37563 | ||||| |||||| || || |||||||| || || ||||| | |||| | || Sbjct 204188 AGCATAAAACAATCAGCTAATCCTTGAACACCAATTCCAATGGGGCGATGTCTAAAGTTT 204129 Query 37564 GATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTA 37623 ||| | | || || ||||||||||||| ||| || |||||||| | ||||||| Sbjct 204128 GATTTCTTTGCCTCAGGTACAGGATAATAATTGACATCAATAATTTTATTCAAATTTTTA 204069 Query 37624 ACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACAT-AAATAC--GTT---------- 37670 | || || || | || | | || ||| || || |||| ||| Sbjct 204068 GCAAGAATCTTAGAAACAAGA-TGAAGTTGATTAAAATTAAATGATGGTTGCCCTTTCTC 204010 Query 37671 ATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTC 37730 | ||| ||| ||| || |||| | ||| ||||||| |||||| ||||||||||||||| Sbjct 204009 AATATCAACGAATCTATTCAATGCAATTGATCCTAAATTACAAACAGCAACTTCATCTGG 203950 Query 37731 GTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCT 37790 || | ||| | ||| || ||||| |||||| || ||||||||||||| || Sbjct 203949 AGCACAATATTCAACAATTTCAGTACAAAGATTAGAACATTTAATTGTTCCCAAGTTTTG 203890 Query 37791 TTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTAT 37850 |||||| |||| |||||||| ||| || || | ||||| || ||||| |||||| Sbjct 203889 TTGATTACTTTTTCTATTACAATGATCCTTGTAAACCATATATGGAGTTCCAGTTTCTAT 203830 Query 37851 TTGAGCCTCGATAATAGATTTCCA--TAAACTT---CTTGCTTTAACGATCGCTTTAAtt 37905 |||| || ||| || ||| ||| | | |||| ||| | | || ||| Sbjct 203829 TTGACTTTCACAAATCTTTTGCCAAATAACCCTAGCCTTGATTT---GTTTTCTGTAACG 203773 Query 37906 tttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCAT 37965 || || || || || | | | || ||||| | ||| |||| |||||| ||| | Sbjct 203772 CTTCTCA--GTCTCATACTTTGTGTACAATTTTTCAAATTCATCCCCCCAACAATCTTCT 203715 Query 37966 AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCC 38025 |||||||||||||| |||||||| | ||||| | | ||||||||| || |||| | Sbjct 203714 AATCCTGGACATTCATGAGGACACATCAATGACCAATATGAATCTTTTTCAACACGTTTC 203655 Query 38026 ATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTC 38085 ||||| |||||||| |||||||| || |||||||| | | | ||||| Sbjct 203654 ATAAACAAATCAGGAACCCATAAACCATAGAATAAATCACGAGCACGTTCCTCTTCTGGT 203595 Query 38086 CCTACATTCTTTCTTAAGCTTAGAAAATCGAATA-TATCAGCGTGCCATGGTTCTATATA 38144 ||| ||| ||||||||| | ||||| ||| |||| || ||||||||||| | ||| Sbjct 203594 CCTGTATT-TTTCTTAAGATCCAAAAATTCCATAATATCTGCATGCCATGGTTCCAAATA 203536 Query 38145 AATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATT 38204 ||| | | ||||| ||||| |||| || || |||| || |||||| | || || || Sbjct 203535 AATTGCAAAAGCTCCAGGTCTCTTATTTCCACCTTGATCAACATATCTTGCAGTATTGTT 203476 Query 38205 ATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGT 38264 | | ||| ||||| ||||| | ||||| ||| | || || | || ||| | | Sbjct 203475 GAAAACTCTCAACATTGGTACCAATCCATTTGATGTTCCATTAGTTCCACCAATAAATGA 203416 Query 38265 ACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAA 38324 || || || || ||| | | ||||| || || || ||| |||||| ||||| Sbjct 203415 TCCATTGGCACGAATACAATGAACATTTAATCCAATACCTCCAGCAGATTTTGAAATTAA 203356 Query 38325 AGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTAT 38384 ||| |||||||| || |||||| | || ||||| ||| || | |||| || || Sbjct 203355 AGCACATTGTTTCAATGTATCATAAATCCCTTCAATAGAATCTCCAGCCATTGTTAATAA 203296 Query 38385 AAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATG 38444 ||||| ||||| ||| || | ||||| || ||||||| ||| ||||| ||||| Sbjct 203295 GAAACATGAAGACAATTGTGGACGAGTTGTTCCTGCATTAAATAGTGTTGGAGAAGCATG 203236 Query 38445 TATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCC 38504 | | |||||||| | |||| | |||| |||||||| || || ||| ||||| | || Sbjct 203235 TGTAAACCATTTCTGTGACATAAAATTGTATGTTTCGATAACTGAATCAATATCTTCTCC 203176 Query 38505 GTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATT 38564 |||||||| | || || ||||| || | ||||||||||||||| ||||| || || Sbjct 203175 ATGAATACCAACAGCAACTCTCATAAGTAAATGTTGTGGTCTTTCAGCAATTTTCTTGTT 203116 Query 38565 CTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAA 38606 ||| | ||||| || |||||| ||||| | |||||| Sbjct 203115 GATTTTTAAAAGATAAGAACGTTCTAAAGTTTTGAATCCAAA 203074 >seq39 Length=206625 Score = 228 bits (252), Expect = 8e-55 Identities = 565/846 (67%), Gaps = 11/846 (1%) Strand=Plus/Plus Query 11280 ATTAAAAATCTATATCCGTAGAAAATATATTCTCTTCTTTATTTGTAAACACCCCCATCT 11339 |||||||||| |||| | ||| || ||||||| | | | | | | |||||| | Sbjct 48600 ATTAAAAATCAGCATCCAAGGTAAAAGTACGTTCTTCTTCAGT-GCACATAACCCCATAT 48658 Query 11340 -TTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 ||||||||||| |||| ||| || ||||| ||||| ||||| | ||| | | Sbjct 48659 CTTTGATATTCAGAAACTTTCTTTTCAAAGAAATTTGTCTTTCCTTCAATTGAAAGGTTT 48718 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACT-CTGTTAA 11457 |||| || ||| ||||| | || || | | ||||| || | | | | ||||| Sbjct 48719 ACCATGAAATCAAATGGATTTTTAACCTTATAAA-TTTTTGGCATGTTTAGTTCAGTTAA 48777 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 | ||| || || |||| || || | ||||||| | |||||||||| || | Sbjct 48778 AAGGTGATCAGCAACATATTCAATGTAGGTACACATTAATCTTGAATTCATACCAATCAT 48837 Query 11518 ATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577 ||| || |||| |||| | || ||| | ||||| || || | || |||| | ||||| Sbjct 48838 ATCAACAGGAAGAGCATCAGTTAAATATTCCTTCTCAATTTCGACAGCATTTCTAATTAT 48897 Query 11578 CGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAA 11637 | | || ||| ||| || | || ||||||| | ||| ||||| Sbjct 48898 TTCATGCACACGCTCTACAGACGGTTTATTCTCAAGATAACTAAACATGAGACAAGCAAA 48957 Query 11638 ATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCAT 11697 ||| | |||||| ||||| ||||| |||| |||||| ||| || || ||||| Sbjct 48958 ATCTCTATGTAATCCTTCATCTCTGGAGATTAATTCATTTGAATGACACAAACCTGGCAT 49017 Query 11698 CAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTC 11757 ||||| |||||||||| |||||| || | |||||| |||||||| || |||||||| || Sbjct 49018 TAATCCACGTTTTTTTAACCAAAAGATTGAAGCAAAAGAACCAGAGAAAAATATTCCTTC 49077 Query 11758 CACAGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTGTTGCTAGATA-TCCATT 11813 ||||| ||||| || | | | ||||||| | | | || || | | || ||||| Sbjct 49078 AACAGCGGCAAAAGCAATAATACGTTCTCCAAAAGATGCATTCTTA-TCGTTAATCCATC 49136 Query 11814 TTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAAT 11873 || ||||||||||| ||||| || | |||| | | || ||| || || | | Sbjct 49137 TTAAAGCCCAATCAGCCTTCTTCTTGATAAATTCAAACTCTGTTAAAGCATTGAAAAGCT 49196 Query 11874 GCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAAT 11933 || |||| | | || | | |||||| || ||||| |||||| || || Sbjct 49197 TATTTCTTTCATCAGTGTCACGGATATATGTTTCAATTAACTTGGAATACATCTCACTAT 49256 Query 11934 GAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACAT 11993 ||||||| |||||||| |||||||||||||| || | ||||| || | || || | Sbjct 49257 GAATATTCTCCATAGCAATTTGAAATCCATAAAAGAAACGTGCTTCAGGGACTTGGACTT 49316 Query 11994 CCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATG 12053 | |||||||||| | ||||| ||||| ||||| ||||| || ||||| || | Sbjct 49317 CTTTTGAAAATCTTTCAACCAAATTTTCATTGACAATTCCATCGGAAGCAGCAAAGAAGG 49376 Query 12054 CTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCT-AAA 12112 |||| | | | |||||||||| |||| | | ||| | | ||||| || ||| | | Sbjct 49377 CTAGGACACGAGATATAAAGTATCTTTCATTGTCAGTCATTGATTCCCAGTC-TCTCATA 49435 Query 12113 TCTTTT 12118 |||||| Sbjct 49436 TCTTTT 49441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468514199626400