Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq15 699 0.0 seq5 562 4e-155 seq39 239 6e-58 seq1 95.1 2e-14 >seq15 Length=622252 Score = 699 bits (774), Expect = 0.0 Identities = 1451/2138 (68%), Gaps = 53/2138 (2%) Strand=Plus/Minus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919 || ||| | || | || || |||||||| || |||| ||| | ||||||| | ||| Sbjct 204878 GCTGGTCTTGTTCTTAAGTAATACATTCCAGTCTTTAAACCACGTTTCCATCCATGGAAA 204819 Query 64920 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 64979 |||||| | | || ||| | || | ||||| ||| | ||| | |||||| | Sbjct 204818 TGCATAGAACTACATACGGCATATGTTGGTTTTGCTACATGAAGATTAAGTGATTGAGAT 204759 Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 ||||| ||| | ||||| | || |||||||| | ||||| |||||| | ||||||| Sbjct 204758 TGATCAATGTAAGCTCCACGATCAGCAGCCATCTCAATGATATCCTTTTGAGAAATTTCC 204699 Query 65040 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGAT 65096 |||| ||| ||||||| | ||| |||| | ||| | | |||| ||||| || Sbjct 204698 CAAACAGTCTTATAAAGTTCCTTGATATGTGTTGGTATTCCAGCGATATTTTGAATTGAA 204639 Query 65097 CCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 65156 ||| || || ||||| |||| | | || ||| |||| || || || | ||| Sbjct 204638 CCATTATTTGATATAATTTCATTCATAACTTCTTCACTCCACAAGTTAAGGTCAATCAAA 204579 Query 65157 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 65216 || |||| ||||| |||||||| | ||| || |||||||| | || | || || | Sbjct 204578 TCTTTAAGAAGATGAGGATTAACAATTTGGAAGTCTCCAGAGAGAACACGACGTGTAAAT 204519 Query 65217 ATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 65276 |||||| ||||| ||||| | ||| |||||||| || | |||||| ||||| || ||| Sbjct 204518 ATATTAGAAGTATATGGTTCAATAGATTCATTATTCCCTAGAATTTGGGCAGTAGAAGCA 204459 Query 65277 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTT 65334 || ||||| || || | || | |||||| | ||| ||| | | ||||| || | Sbjct 204458 GTTGGCATTGGAGCTAATAAAAGGGAATTTCTTACACC--ATGCTTGGCAATTTTTTCCT 204401 Query 65335 TTAGAGGTTCCCAATTCCA-AAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGA 65393 | | |||||| ||| ||| | | ||| || ||||| | Sbjct 204400 TCAATTTAGCCCAATCCCATAAGTTACTT-GGTGTTACATTCCACATATCATATTGTAAA 204342 Query 65394 ATACCGTTA----CTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGC 65449 || || ||| |||| | |||| |||||| || |||||||| ||||| |||| Sbjct 204341 ATTCCTTTAGAAACTGGTG----ATCCATGATATGTTTCATATGGTCCATCCTTAGCAGC 204286 Query 65450 TAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAG 65509 || ||| || ||||| || || || | |||||| ||||| || || |||||||| || Sbjct 204285 TAATTCGCAGGAAGCCTCCAAAGCTCCATGATAAATAGTTTCAAAAATTTTCTTATTAAG 204226 Query 65510 ATCTTGTGCTTCCAGGCTATCA-AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 65568 |||| || | ||| || |||||||| | | || ||||| || ||||||| Sbjct 204225 TTCTTTGGCC-CGAGGAGATGTGAATGGATATCTCATAAGCATAAAACAATCAGCTAATC 204167 Query 65569 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAG 65628 ||||||||||||| || || || | |||||| || || | | || || || | || Sbjct 204166 CTTGAACACCAATTCCAATGGGGCGATGTCTAAAGTTTGATTTCTTTGCCTCAGGTACAG 204107 Query 65629 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTA-CTTTGACCACATCC 65687 |||||||||| | ||| ||||||||||| | |||| | ||| | ||| || ||| Sbjct 204106 GATAATAATTGACATCAATAATTTTATTCAAATTTTTAGCAAGAATCTTAGAA-ACAAGA 204048 Query 65688 TTCAGTTTGAGAAAATCAAATC------GCTCATC-----TATTA-CAAACATGTTCAAT 65735 | |||| ||||| |||| || | | ||| | | || | |||||| Sbjct 204047 TGAAGTTGATTAAAATTAAATGATGGTTGCCCTTTCTCAATATCAACGAATCTATTCAAT 203988 Query 65736 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 65795 |||| ||| | | ||||||||| || || |||| | | | ||||| | || ||| Sbjct 203987 GCAATTGATCCTAAATTACAAACAGCAACTTCATCTGGAGCACAATATTCAACAATTTCA 203928 Query 65796 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 65855 || ||||||||| ||| || || ||||| || |||||||||||||| ||| | ||||| Sbjct 203927 GTACAAAGATTAGAACATTTAATTGTTCCCAAGTTTTGTTGATTACTTTTTCTATTACAA 203868 Query 65856 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 65915 |||||| |||| || ||||||| |||||||| || ||| ||| |||| || | Sbjct 203867 TGATCCTTGTAAACCATATATGGAGTTCCAGTTTCTATTTGACTTTCACAAATCTTTTGC 203808 Query 65916 CAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATAC 65975 || | || | |||||| ||| | |||| | ||| || | || || ||| ||| Sbjct 203807 CAAATAACCCTAGCCTTGATTTGTTTTCTGTAACGCTTCTCAGTCTCATACTTTGTGTAC 203748 Query 65976 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATC 66035 ||| ||| || || || |||||| || || ||||| |||||||||| ||||||||| Sbjct 203747 AATTTTTCAAATTCATCCCCCCAACAATCTTCTAATCCTGGACATTCATGAGGACACATC 203688 Query 66036 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 66095 || ||||| | | || | | || ||||||||||| | |||||||| ||| | | | Sbjct 203687 AATGACCAATATGAATCTTTTTCAACACGTTTCATAAACAAATCAGGAACCCATAAACC- 203629 Query 66096 ATA-AATAAATCTCTGGTTCTATGTTCCTCGTTT---CCTGTATTCTTTTTAAGATCGAG 66151 ||| |||||||| | | | ||||||| | | |||||||| || |||||||| | Sbjct 203628 ATAGAATAAATCACGAGCAC---GTTCCTCTTCTGGTCCTGTATTTTTCTTAAGATCCAA 203572 Query 66152 GAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 66211 || |||||||||| |||||| |||||||| || || || | | ||||||| | || Sbjct 203571 AAATTCCATAATATCTGCATGCCATGGTTCCAAATAAATTGCAAAAGCTCCAGGTCTCTT 203512 Query 66212 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 66271 ||||| || ||||| | ||||| || || || || |||||||||||||||| | | Sbjct 203511 ATTTCCACCTTGATCAACATATCTTGCAGTATTGTTGAAAACTCTCAACATTGGTACCAA 203452 Query 66272 ACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAAT 66331 ||||| ||||| ||||| || || ||| | |||| | ||||||||| | || Sbjct 203451 TCCATTTGATGTTCCATTAGTTCCACCAATAAATGATCCATTGGCACGAATACAATGAAC 203392 Query 66332 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 66391 || || || || || || ||| || ||||| || ||| |||| || |||||||| Sbjct 203391 ATTTAATCCAATACCTCCAGCAGATTTTGAAATTAAAGCACATTGTTTCAATGTATCATA 203332 Query 66392 GATGCCCTCTATACTATCATCCATCA--TGTTAAGTAGAAAACAGCTAGACATTTGGTGA 66449 || || || ||| ||| |||| | |||||| ||||| || ||||| ||| || Sbjct 203331 AATCCCTTCAATAGAATC-TCCAGCCATTGTTAATAAGAAA-CATGAAGACAATTGTGGA 203274 Query 66450 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGT 66509 ||| | ||||| |||||||||| || |||||||| || ||||||||||| | || | Sbjct 203273 CGAGTTGTTCCTGCATTAAATAGTGTTGGAGAAGCATGTGTAAACCATTTCTGTGACATA 203214 Query 66510 AGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGC 66569 | |||||| || || ||| |||| || ||||| | |||||| || || || || | | Sbjct 203213 AAATTGTATGTTTCGATAACTGAATCAATATCTTCTCCATGAATACCAACAGCAACTCTC 203154 Query 66570 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTT 66629 || | | || || ||||||||| | || || ||||| ||||| || | || || | Sbjct 203153 ATAAGTAAATGTTGTGGTCTTTCAGCAATTTTCTTGTTGATTTTTAAAAGATAAGAACGT 203094 Query 66630 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAG 66689 || |||||||| || ||||| | ||| |||||||| || |||| ||| | || Sbjct 203093 TCTAAAGTTTTGAATCCAAAGAATGAGTAGTCAAAGTCTCTGTCATAAACGATAGCAGAA 203034 Query 66690 TTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGA--AATAATCGGAG 66747 || ||||| || || ||| | || ||||| || | ||| | ||| || || | Sbjct 203033 TTAAGTTTGTCAGCATGTTTTTGAATTACATTGTATGT--TTCTTCACTAATCATTGGTG 202976 Query 66748 AATGTTTCCCATTTTTAGGATTGAC-ATAGTTGAATAAATCCTCCATCACTTCACTAAAT 66806 |||| ||| | || | |||| ||| | | | || ||| ||||| ||| Sbjct 202975 TATGTACACCAGTAATATCA-TGACGATAATGATACAGGTCACTCATAACTTCTGAGAAT 202917 Query 66807 AGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAA 66866 ||| ||||||| ||| || | || || | || ||||| || || | ||| |||||| Sbjct 202916 GTTTTCTTTGTTTGTTTATGCATGTTGGAGATAGCGATTCTTGCTGCCAAAATAGCATAA 202857 Query 66867 TCCGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTAC 66925 || ||||| |||| || || | | |||||| | || || || || | |||||||| || Sbjct 202856 TCAGGATGAAGTGTTGT-CATGTTTGCTGCTGTCTCTGCGGCAAGGTTATCCAATTCAAC 202798 Query 66926 CGTTGTTACTCCATTATATATTCCTTGGATAACCTTCA 66963 || | || || || |||| ||||||||||| |||| Sbjct 202797 GGTAGAAACACCTTTGTATAAACCTTGGATAACTTTCA 202760 >seq5 Length=1449561 Score = 562 bits (622), Expect = 4e-155 Identities = 1428/2140 (67%), Gaps = 67/2140 (3%) Strand=Plus/Minus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919 || |||||||| | || ||| ||||| || ||||||| ||| || |||||||| |||| Sbjct 1213746 GCTGGTTTCGTTCTTAAATAATACATCCCTGTTTTTAAACCAAGTTTCCATCCGCGAAAA 1213687 Query 64920 TGCAT---ACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGA 64976 || || ||| || | | || | || | ||||| || ||||| | |||||| Sbjct 1213686 TGTATGGAACTACATATTCCGTAAGAT---GGTTTTGCTACATAAATATTAAGAGATTGG 1213630 Query 64977 CTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATT 65036 |||||| || || ||||| || ||||||||||| | ||||| |||||| | ||| Sbjct 1213629 GATTGATCAATAAATGCTCCTCTATCTGCAGCCATATCAATGATGTCCTTTTGAGATATT 1213570 Query 65037 TCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGTATTCTGA---AT 65092 ||||| | || ||||| || || |||||||| ||||||| | || | || || Sbjct 1213569 TCCCATACGGTCTTATACAAATC-CTTAATATGATCTGGAATTCCTTTAATATGTTTTAT 1213511 Query 65093 GGATCCACCATCTGCCAT-AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGG 65151 |||||| || || ||| || | || ||||||||||| || ||| || Sbjct 1213510 AGATCCATTATAATAAATTAATTGGTTTAATAAT-TCATCATTCCACAAATTTAATTCAA 1213452 Query 65152 TTAAAAC-TCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGA 65210 ||| | | ||| || || || || || |||||||| |||||||||||||| | | Sbjct 1213451 CCAAATCGTGTAAA-AGGTGTGGGTTTACCACTTGAAAATCTCCAGACAATACCCGTCTC 1213393 Query 65211 GTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTT 65270 | || | ||| ||||| ||||| | ||||||||||| || ||||||||||||||| Sbjct 1213392 ATATACAAATTTGAAGTATAAGGTTCAAATGACTCATTATTACCAAAAATTTGAGCAGTT 1213333 Query 65271 GATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTA 65330 ||||| || ||||| || || ||||| || |||||| | ||| ||| |||| ||||| Sbjct 1213332 GATGCTGTTGGCATTGGAGCTACCAACAATGAATTTCTTATACCATATTTTCTAATTTTT 1213273 Query 65331 TCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGT 65390 ||||||| | ||||| ||| | || || ||| |||| Sbjct 1213272 TCTTTTAATAATGACCAATCCCATAAATTACTTGGAGTAACTTTCCATAAATCATATTGT 1213213 Query 65391 AGAATACCGTTACTGGCGTAC----GATCCTACATATGTATCGTATGGTCCTTCCTTCTC 65446 | ||| || || | ||| || ||| |||| || || || || || | | || Sbjct 1213212 AAAATGCC---ACGAGA-TACAAGAGAACCTTCATAAGTTTCATAAGGACCATATTCTTC 1213157 Query 65447 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 65506 ||||| |||||| || || |||||||| | ||| || ||||| || || || || || Sbjct 1213156 AGCTAATTCACATGAAGCTTCCAATGCACCATGATATATTGTTTCAAATATTTTTTTGTT 1213097 Query 65507 TAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 65566 || ||||| |||| | | | ||||| |||| || ||||| | ||||| || Sbjct 1213096 TAAATCTTTAGCTTGTGAAGAAGCGTAGGGATATCTTAAAAGTATAAAAGTATCTGCCAA 1213037 Query 65567 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 65626 ||||||||||||||| || ||||| | |||| || |||| || || || |||| | Sbjct 1213036 TCCTTGAACACCAATGCCAATAGGACGATGTTTCATATTTGATATACGAGTTTCTTCTAA 1212977 Query 65627 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 65686 ||||||||||| |||||||| || ||||| | |||| | | | ||| | | Sbjct 1212976 TGGATAATAATTTATATCTATTATCTTATTCAAATTTTTTGTTAAAAGTTTAGTAATTTT 1212917 Query 65687 CTTCAGTT--TGAGAA---AATCAA---ATCGC-TCATCTATT---ACAAACATGTTCAA 65734 | |||| | | || ||| || ||| | || ||| || ||||| | || || Sbjct 1212916 GTGAAGTTGTTTAAAATTGAATGAAGTAATCCCATCTTCTTTTTCAACAAATCTATTTAA 1212857 Query 65735 TGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 65794 |||| |||| ||| ||||| || || | ||||| | | | |||||| | || || Sbjct 1212856 AGCAATAGATCCCAAGTTACATACAGCGATTTCATTTGAAGAAGAATATTGAACAATTTC 1212797 Query 65795 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 65854 || || | ||| ||| || ||| |||||||||| | ||||||||| || ||||| Sbjct 1212796 TGTACATAAATTTGAACATTTTATGATTCCTAAATTATTTTGATTACTTTTACGATTACA 1212737 Query 65855 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 65914 ||| ||||||| ||| | || || ||||||||||| ||| ||| || || Sbjct 1212736 ATGATCTTTATAAACCATGTAAGGTGTTCCAGTTTCAATTTGACTTTCACATATTTTTTG 1212677 Query 65915 CCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATA 65974 ||||| | ||| ||||| ||| | | | || | ||||| |||| ||| ||| Sbjct 1212676 CCAGAGCATTCGTGCCTTGATTTGACTTCTATAACGTTTTTCATTTTCATATTTAACATA 1212617 Query 65975 CAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACAT 66034 || ||| || || ||||||||| ||| || | || |||||||| | |||||||| Sbjct 1212616 TAAAGTTTCAAATTCTTCTCCCCAACTATTATCAAGACCTGGACATTCGTGAGGACACAT 1212557 Query 66035 CAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 66093 ||| ||||| | || | ||| || ||||||||||| | |||||||| ||| | | Sbjct 1212556 CAATGACCAATAAGAATC-CCTTTCAACACGTTTCATAAATAAATCAGGAACCCATAAAC 1212498 Query 66094 CTATAAATAAATCTCTGGTTCTATGTTCCTCGT---TTCCTGTATTCTTTTTAAGATCGA 66150 | ||||||||| | | | ||||||| | |||||||| || ||||||| | Sbjct 1212497 CATAAAATAAATCACGAG---CACGTTCCTCTTCCGGACCTGTATTTTTCTTAAGATTTA 1212441 Query 66151 GGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 66210 || | |||||| |||||| ||||| | || || || | |||| || | || Sbjct 1212440 AAAATTGAAAAATATCTGCATGCCATGGTTCAATATAAATAGCAAATGCTCCTGGTCTTT 1212381 Query 66211 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TA 66269 | ||||| || ||||| | || | ||| || | |||| | |||| ||||| |||| || Sbjct 1212380 TATTTCCACCTTGATCAACATAACGAGCAGTATCATTAAATACTCGTAACATAGGAACTA 1212321 Query 66270 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTA 66329 || ||||| || | ||||| || || ||| | ||| | |||||||||||| || Sbjct 1212320 AT-CCATTTGAAATTCCATTTGTTCCACTAATAAAAGATCCTGTGGCACGAATATTATTA 1212262 Query 66330 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 66389 | |||||| | ||| ||||| ||| || |||| || || ||| | |||||| Sbjct 1212261 ACACTTAGACCAACTCCACCTGCACCTTTTGAAATTATAGCACAATTTTTAAGAGTATCA 1212202 Query 66390 TAGATGCCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTG 66448 || || || ||||| |||||||| || |||||| || |||||| |||| ||| Sbjct 1212201 TAAATACCTTCTATTGAATCATCCACCATTGTTAA-TAAAAAACATGATGACAATTGTCC 1212143 Query 66449 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 66508 ||||| |||||| |||| || || || || || ||||||||||| ||| | Sbjct 1212142 TTTTGGTGTTCCTGCATTATATAATGTTGGTGATGCATGTAAAAACCATTTTTGAGACA- 1212084 Query 66509 TAGA-TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACAC 66567 || | || || || |||| | || || ||||| | |||||| || || || |||| Sbjct 1212083 TACAGTTATATGTTTCAAGTACAGATTCAATATCTTCTCCATGAATACCAACAGCAACAC 1212024 Query 66568 GCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATT 66627 |||| || | || || ||||||||||| || | | || ||| | ||||| || ||| Sbjct 1212023 GCATAAAAAGATGTTGTGGTCTTTCAACAATACAGCTATTAATTCTTAACAAATATGATC 1211964 Query 66628 TTTCCAAAGTTTTAAAACCAAA-ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACC 66686 |||||| |||||||||||||| | ||| || || |||| || | | || | Sbjct 1211963 GTTCCAACGTTTTAAAACCAAAGAAAGTAAAATTGTAA-TCTCTTTTATGATCGATTGCT 1211905 Query 66687 GAGTTGAGTTTATCCTTATATTTGT---TAACTACATCCATGGTAATACTTGAAATAATC 66743 || | | | | || |||| ||| | ||| || || | | ||| |||||| Sbjct 1211904 GAATCTAATATTTCTTTATGTTTTTGAATAATTAAATTAGTTTTTTCACT---AATAATT 1211848 Query 66744 GGAGAATG---TTTCCCATTTTTAGGATTGACATAGTTGAATA-AATC-CTCCATCACTT 66798 ||| ||| ||| |||||| ||| | || || ||| |||| ||||| |||| Sbjct 1211847 GGACTATGTCTTTTTGTATTTTT---ATTTATATTATT--ATACAATCTATCCATAACTT 1211793 Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 ||| | || || |||| ||| || | |||||| | || ||||||| || | || Sbjct 1211792 TTGAAAAAACTTCTTCCGTTTGTTTATGCATATTTGAAATAGCAATTCTAGAAGCCAAAA 1211733 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 || ||||||| |||||| ||| | | | || || | ||| ||||| | | || | Sbjct 1211732 TGCCATAATCAGGATGTATAACAGTTCTATTAGCAGCAACTTCAGCTGCTAAGTTATCAA 1211673 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 66958 ||| || || ||||| || ||||||| |||||| | ||| Sbjct 1211672 GTTCAACAGTAGTTACACCTTTATATAATCCTTGAACAAC 1211633 >seq39 Length=206625 Score = 239 bits (264), Expect = 6e-58 Identities = 545/812 (67%), Gaps = 10/812 (1%) Strand=Plus/Plus Query 35809 TCTTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTCTTGAG---ACATAACTCCCAT 35865 || |||||||||| |||| | | |||| | ||||||| || ||||||| ||||| Sbjct 48598 TCATTAAAAATCAGCATCCAAGGTAAAAGTACGTTCTTCTTCAGTGCACATAAC-CCCAT 48656 Query 35866 TT-TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATAT 35924 | |||| |||||| || ||||| || ||||| || || ||||| | ||| | | Sbjct 48657 ATCTTTGATATTCAGAAACTTTCTTTTCAAAGAAATTTGTCTTTCCTTCAATTGAAAGGT 48716 Query 35925 TTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAA 35984 || |||||||||| |||||||| |||| |||||||||||| | | ||||| | Sbjct 48717 TTACCATGAAATCAAATGGATTTTTAACCTTATAAATTTTTGGCATGTTTAGTTCAGTTA 48776 Query 35985 TCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 36044 | ||| || ||| |||| || || || ||| | | ||||||| || || | Sbjct 48777 AAAGGTGATCAGCAACATATTCAATGTAGGTACACATTAATCTTGAATTCATACCAATCA 48836 Query 36045 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 36104 | ||| |||||||| |||| | | |||| | ||||| ||| || | | | || | Sbjct 48837 TATCAACAGGAAGAGCATCAGTTAAATATTCCTTCTCAATTTCGACAGCATTTCTAATTA 48896 Query 36105 TAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 36164 | || ||| || |||| || | | || ||||||| | ||| || | Sbjct 48897 TTTCATGCACACGCTCTACAGACGGTTTATTCTCAAGATAACTAAACATGAGACAAGCAA 48956 Query 36165 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 36224 |||| | |||| || || ||||| |||||||| || ||| | || |||| Sbjct 48957 AATCTCTATGTAATCCTTCATCTCTGGAGATTAATTCATTTGAATGACACAAACCTGGCA 49016 Query 36225 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 36284 ||| ||||| ||||| | |||||| || || ||||| || ||||| || || ||||||| Sbjct 49017 TTAATCCACGTTTTTTTAACCAAAAGATTGAAGCAAAAGAACCAGAGAAAAATATTCCTT 49076 Query 36285 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT-GT--ATCCACT 36341 | || || ||||| ||||||| | |||||| || ||| | | || || ||||| Sbjct 49077 CAACAGCGGCAAAAGCAATAATACGTTCTCCAAAAGATGCATTCTTATCGTTAATCCATC 49136 Query 36342 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT-ATAGCATTAAAGAGA 36400 || ||||||||| |||||||| || | | || || ||| | | |||||| || || Sbjct 49137 TTAAAGCCCAATCAGCCTTCTTCTTGATA-AATTCAAACTCTGTTAAAGCATTGAAAAGC 49195 Query 36401 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 36460 | ||| |||||| | | || | |||||| ||||| || |||||| || | Sbjct 49196 TTATTTCTTTCATCAGTGTCACGGATATATGTTTCAATTAACTTGGAATACATCTCACTA 49255 Query 36461 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 36520 ||||| || || || || ||||||||||| || || | | || || | | || ||| Sbjct 49256 TGAATATTCTCCATAGCAATTTGAAATCCATAAAAGAAACGTGCTTCAGGGACTTGGACT 49315 Query 36521 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 36580 ||| | |||||| ||| | ||||||||||| || ||||| || || ||||| || Sbjct 49316 TCTTTTGAAAATCTTTCAACCAAATTTTCATTGACAATTCCATCGGAAGCAGCAAAGAAG 49375 Query 36581 GCCAATACATGTTTTATAAAATATTTTTCGTT 36612 || | ||| | |||||| ||| |||| || Sbjct 49376 GCTAGGACACGAGATATAAAGTATCTTTCATT 49407 >seq1 Length=6158768 Score = 95.1 bits (104), Expect = 2e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 31218 ACCTAATTCCTTGACCTGAGTTAATGATCTCCAATCCATATTAGCGCTTCCTAAATAAAT 31277 ||| | ||||||||| | |||||||||| ||||||||||||| || || || | |||||| Sbjct 2809773 ACCAAGTTCCTTGACTTCAGTTAATGATTTCCAATCCATATTTGCACTACCAATATAAAT 2809832 Query 31278 ATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCC 31319 |||| | | |||| ||||||||||| ||||| | ||| || Sbjct 2809833 ATGTTTTTGATCAACAATCCAAAATTTCGTATGTAAAACACC 2809874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658157908840400