Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq858 100 2e-16 >seq858 Length=1962 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20951 GTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGAT 21010 ||||||||| || |||||||| || || || ||||| ||| ||| ||| | || | Sbjct 1661 GTGGGCGTCGCCGAAGGTGTGGACGAAATCGCCCGGCTCCAGCCCCACGACCTTGGCCAG 1720 Query 21011 CAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGC 21070 || | ||| || ||||||||| ||||||||| ||||| ||||| ||| || ||||| Sbjct 1721 CATGTGCGTGAGCAGGGCGTAGGAGGCGATGTTGAACGGCACCCCTAGGAACACATCGGC 1780 Query 21071 GGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAAC 21130 || | || |||||||||||| ||||| || || ||| | || || ||| Sbjct 1781 TGAGCGTTGATACAGCTGGCAGCTCAGCTTTCCGTCGGCGACGAAGAATTGGAACAGGCA 1840 Query 21131 GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGC 21180 ||| || || || || ||||| | | || || |||||||| |||| Sbjct 1841 GTGGCAGGGCGGCAGCGCCATGTCGTCCACATCGGCCGGGTTCCAGGCGC 1890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427766563528800