Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq547 91.5 1e-13
seq29 91.5 1e-13
>seq547
Length=3469
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | ||| ||||||| || || ||||||||||| ||||||||
Sbjct 1367 CCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAA 1426
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || || ||||| || || || |||||| | || |||||||| || || |||||
Sbjct 1427 AGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGG 1486
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| || || ||| | |||| || | | || | || |||| || || ||
Sbjct 1487 ATACCTTCCTTATC-TTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAAC 1545
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768
||||| || | ||||| || || || || || || || || |||||| ||
Sbjct 1546 CTCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCATACCT 1597
>seq29
Length=268433
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | ||| ||||||| || || ||||||||||| ||||||||
Sbjct 198316 CCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAA 198375
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || || ||||| || || || |||||| | || |||||||| || || |||||
Sbjct 198376 AGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGG 198435
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| || || ||| | |||| || | | || | || |||| || || ||
Sbjct 198436 ATACCTTCCTTATC-TTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAAC 198494
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768
||||| || | ||||| || || || || || || || || |||||| ||
Sbjct 198495 CTCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCATACCT 198546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496052776552000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |