Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq547 91.5 1e-13 seq29 91.5 1e-13 >seq547 Length=3469 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| || || ||||||||||| |||||||| Sbjct 1367 CCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAA 1426 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| || || || |||||| | || |||||||| || || ||||| Sbjct 1427 AGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGG 1486 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| | |||| || | | || | || |||| || || || Sbjct 1487 ATACCTTCCTTATC-TTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAAC 1545 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||| || | ||||| || || || || || || || || |||||| || Sbjct 1546 CTCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCATACCT 1597 >seq29 Length=268433 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| || || ||||||||||| |||||||| Sbjct 198316 CCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAA 198375 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| || || || |||||| | || |||||||| || || ||||| Sbjct 198376 AGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGG 198435 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| | |||| || | | || | || |||| || || || Sbjct 198436 ATACCTTCCTTATC-TTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAAC 198494 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||| || | ||||| || || || || || || || || |||||| || Sbjct 198495 CTCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCATACCT 198546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496052776552000