Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq15 776 0.0 seq5 643 2e-179 seq39 210 3e-49 >seq15 Length=622252 Score = 776 bits (860), Expect = 0.0 Identities = 1464/2132 (69%), Gaps = 41/2132 (2%) Strand=Plus/Minus Query 78739 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAA 78798 || ||| | || | || || |||||||| || |||| ||| | ||||||| | |||| Sbjct 204878 GCTGGTCTTGTTCTTAAGTAATACATTCCAGTCTTTAAACCACGTTTCCATCCATGGAAA 204819 Query 78799 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 78858 |||||| | | || ||| | || | ||||| ||| | ||| | |||||| | Sbjct 204818 TGCATAGAACTACATACGGCATATGTTGGTTTTGCTACATGAAGATTAAGTGATTGAGAT 204759 Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 ||||| ||| | ||||| | || |||||||| | ||||| |||||| | ||||||| Sbjct 204758 TGATCAATGTAAGCTCCACGATCAGCAGCCATCTCAATGATATCCTTTTGAGAAATTTCC 204699 Query 78919 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGAT 78975 |||| ||| ||||||| | ||| |||| | ||| | | |||| ||||| || Sbjct 204698 CAAACAGTCTTATAAAGTTCCTTGATATGTGTTGGTATTCCAGCGATATTTTGAATTGAA 204639 Query 78976 CCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAA 79035 ||| || || ||||| |||| | | |||||| |||| || || || | ||| Sbjct 204638 CCATTATTTGATATAATTTCATTCATAACTTCTTCACTCCACAAGTTAAGGTCAATCAAA 204579 Query 79036 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 79095 || |||| ||||| |||||||| | ||| || |||||||| | || | || || | Sbjct 204578 TCTTTAAGAAGATGAGGATTAACAATTTGGAAGTCTCCAGAGAGAACACGACGTGTAAAT 204519 Query 79096 ATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCC 79155 |||||| ||||||||||| | ||||||||||| || | |||||| ||||| || || Sbjct 204518 ATATTAGAAGTATATGGTTCAATAGATTCATTATTCCCTAGAATTTGGGCAGTAGAAGCA 204459 Query 79156 GTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTG--ATTTTATCTT 79213 |||||||| || || | || | |||||| | ||| ||| | | ||||| || | Sbjct 204458 GTTGGCATTGGAGCTAATAAAAGGGAATTTCTTACACC--ATGCTTGGCAATTTTTTCCT 204401 Query 79214 TTAGAGATT---CCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTA 79270 | | ||| |||||||||| | | | || |||||||| | ||||||||||| Sbjct 204400 TCA---ATTTAGCCCAATCCCATAAGTTACTTGGTGTTACATTCCACATATCATATTGTA 204344 Query 79271 GAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTA 79330 ||| || ||| | | |||||| ||||||||||| ||||| ||||| | |||| Sbjct 204343 AAATTCCTTTAGAAACTGGTGATCCATGATATGTTTCATATGGTCCATCCTTAGCAGCTA 204284 Query 79331 ATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGAT 79390 |||| || ||||| || ||||| | |||||| ||||| ||||| |||||||| || | Sbjct 204283 ATTCGCAGGAAGCCTCCAAAGCTCCATGATAAATAGTTTCAAAAATTTTCTTATTAAGTT 204224 Query 79391 CTTGTGCTTCTAGGCTATCA-AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCT 79449 ||| || | ||| || |||||||| | | || ||||| || ||||||||| Sbjct 204223 CTTTGGCC-CGAGGAGATGTGAATGGATATCTCATAAGCATAAAACAATCAGCTAATCCT 204165 Query 79450 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGA 79509 ||||||||||| || || || | |||||| || || | | || || || | |||| Sbjct 204164 TGAACACCAATTCCAATGGGGCGATGTCTAAAGTTTGATTTCTTTGCCTCAGGTACAGGA 204105 Query 79510 TAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTA-CTTTGACCACATCCTT 79568 |||||||| | ||| ||||||||||| | ||| | | | | ||| || ||| | Sbjct 204104 TAATAATTGACATCAATAATTTTATTCAAATTTTTAGCAAGAATCTTAGAA-ACAAGATG 204046 Query 79569 TAGTTTGAGAAAATCAAATCGT-------CCATCT----ATTA-CAAACATGTTCAACGC 79616 |||| ||||| |||| | | ||| || | | || | ||||| || Sbjct 204045 AAGTTGATTAAAATTAAATGATGGTTGCCCTTTCTCAATATCAACGAATCTATTCAATGC 203986 Query 79617 GACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGT 79676 | ||| | | ||||||||| || || |||| | | | ||||| | |||||||| Sbjct 203985 AATTGATCCTAAATTACAAACAGCAACTTCATCTGGAGCACAATATTCAACAATTTCAGT 203926 Query 79677 GCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGC 79736 || || ||| ||| ||||| ||||| || |||||||||||||| ||| | ||||| Sbjct 203925 ACAAAGATTAGAACATTTAATTGTTCCCAAGTTTTGTTGATTACTTTTTCTATTACAATG 203866 Query 79737 ATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 79796 |||||| |||| || | ||||| |||||||| || ||| ||| |||| || ||| Sbjct 203865 ATCCTTGTAAACCATATATGGAGTTCCAGTTTCTATTTGACTTTCACAAATCTTTTGCCA 203806 Query 79797 GACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAA 79856 | || | |||||| ||| |||| | ||| || | || || | ||| || || Sbjct 203805 AATAACCCTAGCCTTGATTTGTTTTCTGTAACGCTTCTCAGTCTCATACTTTGTGTACAA 203746 Query 79857 TCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAA 79916 | ||| || || || |||||| ||| |||||||| |||||||| | |||||||||||| Sbjct 203745 TTTTTCAAATTCATCCCCCCAACAATCTTCTAATCCTGGACATTCATGAGGACACATCAA 203686 Query 79917 CGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 79976 ||||| | | ||| | | || ||||||||||| | |||||||| ||| | | | || Sbjct 203685 TGACCAATATGAATCTTTTTCAACACGTTTCATAAACAAATCAGGAACCCATAAACC-AT 203627 Query 79977 A-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 80035 | |||| ||| | | | | ||| || ||||||||| || |||||||| | || Sbjct 203626 AGAATAAATCACGAGCACGTTCCTCTTCTGGTCCTGTATTTTTCTTAAGATCCAAAAATT 203567 Query 80036 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTC 80095 |||||||||| | |||||| |||||||| || || || | | |||| |||| || |||| Sbjct 203566 CCATAATATCTGCATGCCATGGTTCCAAATAAATTGCAAAAGCTCCAGGTCTCTTATTTC 203507 Query 80096 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 80155 | || ||||| | ||||| || || || || |||||||||||||||| | | |||| Sbjct 203506 CACCTTGATCAACATATCTTGCAGTATTGTTGAAAACTCTCAACATTGGTACCAATCCAT 203447 Query 80156 TGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATA 80215 | ||||| ||||| || || ||| | |||| ||||||||||| | || || Sbjct 203446 TTGATGTTCCATTAGTTCCACCAATAAATGATCCATTGGCACGAATACAATGAACATTTA 203387 Query 80216 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 80275 || || || || || ||| || ||||| || ||| |||| || |||||||| || | Sbjct 203386 ATCCAATACCTCCAGCAGATTTTGAAATTAAAGCACATTGTTTCAATGTATCATAAATCC 203327 Query 80276 CCTCTATGCTATCATCAATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 80334 | || || ||| || ||| ||||| ||||| || ||||| ||| ||||| | Sbjct 203326 CTTCAATAGAATCTCCAGCCATTGTTAATAAGAAA-CATGAAGACAATTGTGGACGAGTT 203268 Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| |||||||||| || |||||||| || ||||||||||| | |||| | |||| Sbjct 203267 GTTCCTGCATTAAATAGTGTTGGAGAAGCATGTGTAAACCATTTCTGTGACATAAAATTG 203208 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || || || ||| |||| || ||||| | |||||| || || || || | ||| | Sbjct 203207 TATGTTTCGATAACTGAATCAATATCTTCTCCATGAATACCAACAGCAACTCTCATAAGT 203148 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 | || || ||||||||| | || || || || ||||| || | ||||| ||| ||| Sbjct 203147 AAATGTTGTGGTCTTTCAGCAATTTTCTTGTTGATTTTTAAAAGATAAGAACGTTCTAAA 203088 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 80574 ||||| || ||||| | ||| |||||||| || |||| ||| | || || ||| Sbjct 203087 GTTTTGAATCCAAAGAATGAGTAGTCAAAGTCTCTGTCATAAACGATAGCAGAATTAAGT 203028 Query 80575 TTATCCTTATATTTGTTAACTACATCCATG-GTGATACTTGA--AATAATCGGAGAATGT 80631 || || || ||| | || ||||| || || | ||| | ||| || || | |||| Sbjct 203027 TTGTCAGCATGTTTTTGAATTACAT---TGTATGTTTCTTCACTAATCATTGGTGTATGT 202971 Query 80632 TTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttt 80691 ||| | || || | ||| | | | || ||| ||||| ||| ||| Sbjct 202970 ACACCAGTAATATCATGACGATAATGATACAGGTCACTCATAACTTCTGAGAATGTTTTC 202911 Query 80692 tttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGA 80751 ||||||| || || | || || | || ||||| || || ||||| |||||||| ||| Sbjct 202910 TTTGTTTGTTTATGCATGTTGGAGATAGCGATTCTTGCTGCCAAAATAGCATAATCAGGA 202851 Query 80752 TGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGT 80810 || |||| || || | | |||||| | || || || || | |||||||| || || | Sbjct 202850 TGAAGTGTTGT-CATGTTTGCTGCTGTCTCTGCGGCAAGGTTATCCAATTCAACGGTAGA 202792 Query 80811 TACTCCATTATATATTCCTTGGATAACCTTCA 80842 || || || |||| ||||||||||| |||| Sbjct 202791 AACACCTTTGTATAAACCTTGGATAACTTTCA 202760 >seq5 Length=1449561 Score = 643 bits (712), Expect = 2e-179 Identities = 1446/2140 (68%), Gaps = 67/2140 (3%) Strand=Plus/Minus Query 78739 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAA 78798 || |||||||| | || ||| ||||| || ||||||| ||| || |||||||| ||| Sbjct 1213746 GCTGGTTTCGTTCTTAAATAATACATCCCTGTTTTTAAACCAAGTTTCCATCCGCGAAAA 1213687 Query 78799 TGCAT---ACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGA 78855 || || ||| || | | || | || | ||||| || ||||| | |||||| Sbjct 1213686 TGTATGGAACTACATATTCCGTAAGAT---GGTTTTGCTACATAAATATTAAGAGATTGG 1213630 Query 78856 CTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATT 78915 |||||| || || ||||| || ||||||||||| | ||||| |||||| | ||| Sbjct 1213629 GATTGATCAATAAATGCTCCTCTATCTGCAGCCATATCAATGATGTCCTTTTGAGATATT 1213570 Query 78916 TCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGTATTCTGA---AT 78971 ||||| | || ||||| || || |||||||| ||||||| | || | || || Sbjct 1213569 TCCCATACGGTCTTATACAAATC-CTTAATATGATCTGGAATTCCTTTAATATGTTTTAT 1213511 Query 78972 GGATCCACCATCTGCCAT-AATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGG 79030 |||||| || || ||| || | || || |||||||| || ||| || Sbjct 1213510 AGATCCATTATAATAAATTAATTGGTTTAATAAT-TCATCATTCCACAAATTTAATTCAA 1213452 Query 79031 TTAAAAC-TCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGA 79089 ||| | | ||| || || || || || |||||||| |||||||||||||| | | Sbjct 1213451 CCAAATCGTGTAAA-AGGTGTGGGTTTACCACTTGAAAATCTCCAGACAATACCCGTCTC 1213393 Query 79090 GTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTT 79149 | || | ||| ||||| ||||| | || |||||||| || ||||||||||||||| Sbjct 1213392 ATATACAAATTTGAAGTATAAGGTTCAAATGACTCATTATTACCAAAAATTTGAGCAGTT 1213333 Query 79150 GATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTA 79209 ||||| |||||||| || || ||||| || |||||| | ||| ||| ||| ||||| Sbjct 1213332 GATGCTGTTGGCATTGGAGCTACCAACAATGAATTTCTTATACCATATTTTCTAATTTTT 1213273 Query 79210 TCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGT 79269 ||||||| || ||||||||| | || | || ||| ||||| | |||||||||| Sbjct 1213272 TCTTTTAATAATGACCAATCCCATAAATTACTTGGAGTAACTTTCCATAAATCATATTGT 1213213 Query 79270 AGAATACC----GTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTC 79325 | ||| || | ||| || | | ||| || ||||||||||| || | | ||| Sbjct 1213212 AAAATGCCACGAGATACAAGAGAA----CCTTCATAAGTTTCATAAGGACCATATTCTTC 1213157 Query 79326 GGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATT 79385 ||||||||||| || || ||||| || | ||| || ||||| || || || || || Sbjct 1213156 AGCTAATTCACATGAAGCTTCCAATGCACCATGATATATTGTTTCAAATATTTTTTTGTT 1213097 Query 79386 GAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 79445 | ||||| |||| | | | | ||||| |||| || ||||| | ||||| || Sbjct 1213096 TAAATCTTTAGCTTGTGAAGAAGCGTAGGGATATCTTAAAAGTATAAAAGTATCTGCCAA 1213037 Query 79446 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAAT 79505 ||||||||||||||| || ||||| | |||| || |||| || || || |||| | Sbjct 1213036 TCCTTGAACACCAATGCCAATAGGACGATGTTTCATATTTGATATACGAGTTTCTTCTAA 1212977 Query 79506 AGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATC 79565 ||||||||||| |||||||| || ||||| | ||| | || | ||| | | Sbjct 1212976 TGGATAATAATTTATATCTATTATCTTATTCAAATTTTTTGTTAAAAGTTTAGTAATTTT 1212917 Query 79566 CTTTAGTTTGAGAAAATCAAATC--GT----CCATCTATT------ACAAACATGTTCAA 79613 | |||| ||||| ||| || |||||| | ||||| | || || Sbjct 1212916 GTGAAGTTGTTTAAAATTGAATGAAGTAATCCCATCTTCTTTTTCAACAAATCTATTTAA 1212857 Query 79614 CGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTC 79673 || | |||| ||| ||||| || || | ||||| | | | |||||| | ||||| Sbjct 1212856 AGCAATAGATCCCAAGTTACATACAGCGATTTCATTTGAAGAAGAATATTGAACAATTTC 1212797 Query 79674 AGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 79733 || || | || ||| || ||| |||||||||| | ||||||||| || ||||| Sbjct 1212796 TGTACATAAATTTGAACATTTTATGATTCCTAAATTATTTTGATTACTTTTACGATTACA 1212737 Query 79734 CGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 79793 ||| ||||||| ||| | || || ||||||||||| ||| ||| || || Sbjct 1212736 ATGATCTTTATAAACCATGTAAGGTGTTCCAGTTTCAATTTGACTTTCACATATTTTTTG 1212677 Query 79794 CCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTC--TTTCGTATTGTGTA 79851 ||||| | ||| ||||| ||| ||||| ||| | ||| || |||| |||| | Sbjct 1212676 CCAGAGCATTCGTGCCTTGATTT--GACTTCTATAACGTTTTTCATTTTCATATTTAACA 1212619 Query 79852 TATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACAC 79911 ||||| ||| || || ||||||||| || || | || |||||||||| ||||||| Sbjct 1212618 TATAAAGTTTCAAATTCTTCTCCCCAACTATTATCAAGACCTGGACATTCGTGAGGACAC 1212559 Query 79912 ATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAA 79969 ||||| ||||| | ||| ||||| || ||||||||||| | |||||||| ||| | Sbjct 1212558 ATCAATGACCAATAAGAATC--CCTTTCAACACGTTTCATAAATAAATCAGGAACCCATA 1212501 Query 79970 GAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 80029 | | ||||| ||| | | | | ||| || |||||||| || ||||||| | Sbjct 1212500 AACCATAAAATAAATCACGAGCACGTTCCTCTTCCGGACCTGTATTTTTCTTAAGATTTA 1212441 Query 80030 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTT 80089 || | |||||| | |||||| ||||| | || || || | |||| |||| || Sbjct 1212440 AAAATTGAAAAATATCTGCATGCCATGGTTCAATATAAATAGCAAATGCTCCTGGTCTTT 1212381 Query 80090 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TA 80148 | ||||| || ||||| | || | ||| || | |||| | |||| ||||| |||| || Sbjct 1212380 TATTTCCACCTTGATCAACATAACGAGCAGTATCATTAAATACTCGTAACATAGGAACTA 1212321 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208 || ||||| || | ||||| || || ||| | ||| |||||||||||||| || Sbjct 1212320 AT-CCATTTGAAATTCCATTTGTTCCACTAATAAAAGATCCTGTGGCACGAATATTATTA 1212262 Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268 | |||||| | ||| ||||| ||| || |||| || || ||| | |||||| Sbjct 1212261 ACACTTAGACCAACTCCACCTGCACCTTTTGAAATTATAGCACAATTTTTAAGAGTATCA 1212202 Query 80269 TAGATGCCCTCTATGCTATCATCAATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTG 80327 || || || ||||| |||||| | || |||||| || |||||| |||| ||| Sbjct 1212201 TAAATACCTTCTATTGAATCATCCACCATTGTTAA-TAAAAAACATGATGACAATTGTCC 1212143 Query 80328 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAG 80387 ||||| |||||| |||| || || || || || ||||||||||| ||||| Sbjct 1212142 TTTTGGTGTTCCTGCATTATATAATGTTGGTGATGCATGTAAAAACCATTTTTGAGACA- 1212084 Query 80388 TAGA-TTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACAC 80446 || | || || || |||| | ||||| ||||| | |||||| || || || |||| Sbjct 1212083 TACAGTTATATGTTTCAAGTACAGATTCAATATCTTCTCCATGAATACCAACAGCAACAC 1212024 Query 80447 GCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATT 80506 |||| || | || || ||||||||||| || | |||| ||| | ||||| || ||| Sbjct 1212023 GCATAAAAAGATGTTGTGGTCTTTCAACAATACAGCTATTAATTCTTAACAAATATGATC 1211964 Query 80507 TTTCCAAAGTTTTAAAACCAAA-ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACC 80565 |||||| |||||||||||||| | ||| || || |||| || | | || | Sbjct 1211963 GTTCCAACGTTTTAAAACCAAAGAAAGTAAAATTGTAA-TCTCTTTTATGATCGATTGCT 1211905 Query 80566 GAGTTGAGTTTATCCTTATATTTGT---TAACTACATCCATGGTGATACTTGAAATAATC 80622 || | | | | || |||| ||| | ||| || || | | ||| |||||| Sbjct 1211904 GAATCTAATATTTCTTTATGTTTTTGAATAATTAAATTAGTTTTTTCACT---AATAATT 1211848 Query 80623 GGAGAATG---TTTCCCATTTTTAGGATTAACATAGTTGAATA-AATC-CTCCATCACTT 80677 ||| ||| ||| |||||| ||| | || || ||| |||| ||||| |||| Sbjct 1211847 GGACTATGTCTTTTTGTATTTTT---ATTTATATTATT--ATACAATCTATCCATAACTT 1211793 Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 ||| | || || |||| || || | |||||| | || ||||| | || |||| Sbjct 1211792 TTGAAAAAACTTCTTCCGTTTGTTTATGCATATTTGAAATAGCAATTCTAGAAGCCAAAA 1211733 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 || ||||||| |||||| ||| | | | || || | ||| ||||| | | || | Sbjct 1211732 TGCCATAATCAGGATGTATAACAGTTCTATTAGCAGCAACTTCAGCTGCTAAGTTATCAA 1211673 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 80837 ||| || || ||||| || ||||||| |||||| | ||| Sbjct 1211672 GTTCAACAGTAGTTACACCTTTATATAATCCTTGAACAAC 1211633 >seq39 Length=206625 Score = 210 bits (232), Expect = 3e-49 Identities = 562/847 (66%), Gaps = 14/847 (2%) Strand=Plus/Plus Query 49611 TCTTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGAG---ACATAACTCCCAT 49667 || |||||| ||| |||| | | |||| | ||||||| || ||||||| ||||| Sbjct 48598 TCATTAAAAATCAGCATCCAAGGTAAAAGTACGTTCTTCTTCAGTGCACATAAC-CCCAT 48656 Query 49668 TT-TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATAT 49726 | |||| |||||| || ||||| || ||||| || |||||||| | ||| | | Sbjct 48657 ATCTTTGATATTCAGAAACTTTCTTTTCAAAGAAATTTGTCTTTCCTTCAATTGAAAGGT 48716 Query 49727 TTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAA 49786 || ||||||||||||| ||||| |||| |||||||||||| | | ||||| | Sbjct 48717 TTACCATGAAATCAAATGGATTTTTAACCTTATAAATTTTTGGCATGTTTAGTTCAGTTA 48776 Query 49787 TCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 49846 | ||| || ||| |||| || || || ||| | | ||||||| || || | Sbjct 48777 AAAGGTGATCAGCAACATATTCAATGTAGGTACACATTAATCTTGAATTCATACCAATCA 48836 Query 49847 GTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 49906 | ||| |||||||| |||| | | |||| | ||||| || |||| | | || | Sbjct 48837 TATCAACAGGAAGAGCATCAGTTAAATATTCCTTCTCAATTTCGACAGCATTTCTAATTA 48896 Query 49907 TAG-ATCTA-ACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGC 49964 | || | ||| | || || |||| || | | || ||||||| | ||| || Sbjct 48897 TTTCATGCACACGCT--CTACAGACGGTTTATTCTCAAGATAACTAAACATGAGACAAGC 48954 Query 49965 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 50024 ||||| | || | || || ||||| |||| ||| || ||| | || || Sbjct 48955 AAAATCTCTATGTAATCCTTCATCTCTGGAGATTAATTCATTTGAATGACACAAACCTGG 49014 Query 50025 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCC 50084 ||||| ||||| ||||| | |||||| || || ||||| || ||||| || || ||||| Sbjct 49015 CATTAATCCACGTTTTTTTAACCAAAAGATTGAAGCAAAAGAACCAGAGAAAAATATTCC 49074 Query 50085 TTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCAT-GT--ATCCA 50141 ||| || |||||||| |||| || | |||||| || || | | || || ||||| Sbjct 49075 TTCAACAGCGGCAAAAGCAATAATACGTTCTCCAAAAGATGCATTCTTATCGTTAATCCA 49134 Query 50142 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 || ||||||||| |||||||| || | | | | | | || ||||| || || Sbjct 49135 TCTTAAAGCCCAATCAGCCTTCTTCTTGATAAATTCAAACTCTGTTAAAGCATTGAAAAG 49194 Query 50202 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 50261 | ||| |||||| | | || | ||| || || || || |||||| || Sbjct 49195 CTTATTTCTTTCATCAGTGTCACGGATATATGTTTCAATTAACTTGGAATACATCTCACT 49254 Query 50262 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCAC 50321 |||||| || || || || || |||||||| || || | | || || | | || || Sbjct 49255 ATGAATATTCTCCATAGCAATTTGAAATCCATAAAAGAAACGTGCTTCAGGGACTTGGAC 49314 Query 50322 TTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 50381 |||| | |||||| |||| | ||||||||||| || ||||| || || ||||| || Sbjct 49315 TTCTTTTGAAAATCTTTCAACCAAATTTTCATTGACAATTCCATCGGAAGCAGCAAAGAA 49374 Query 50382 CGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATT-CCAATCATTGA 50440 || | ||| | |||||| | | |||| ||| || | || ||| ||| || | | Sbjct 49375 GGCTAGGACACGAGATATAAAGTATCTTTCATTGTCAGTCA-TTGATTCCCAGTCTCTCA 49433 Query 50441 TATCTTT 50447 ||||||| Sbjct 49434 TATCTTT 49440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718252549168400