Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq39 275 6e-69 seq1 82.4 7e-11 >seq39 Length=206625 Score = 275 bits (304), Expect = 6e-69 Identities = 540/784 (69%), Gaps = 16/784 (2%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTT-T 13582 ||||||||| |||| || | |||| | || |||| | | ||||| ||||| | | Sbjct 48602 TAAAAATCAGCATCCAAGGTAAAAGTACGTTCTTCTTCAGTGCACATAAC-CCCATATCT 48660 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||||||| |||| | ||||||||||| || || || ||||| | ||| | ||| | Sbjct 48661 TTGATATTCAGAAACTTTCTTTTCAAAGAAATTTGTCTTTCCTTCAATTGAAAGGTTTAC 48720 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCT-AGTTCTAATAGTA 13701 ||| ||||||||||||||| || || | | | ||| | || | ||||| || | Sbjct 48721 CATGAAATCAAATGGATTT-TTAACCTTATAAATTTTTGGCATGTTTAGTTCAGTTAAAA 48779 Query 13702 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13761 |||||||| | | ||||| || | ||||||| |||||||||| || | | Sbjct 48780 GGTGATCAGCAACATATTCAATGTAGGTACACATTAATCTTGAATTCATACCAATCATAT 48839 Query 13762 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAA 13821 ||||||| || |||||| |||| || || || ||||| | || |||| | Sbjct 48840 CAACAGGAAGAGCATCAGTTAAATATTCCTTCTCAATTTCGACAGCAT---TTCTAATTA 48896 Query 13822 TTGTA---ATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 13878 || | | | ||| ||| || || | |||| |||| || | ||| |||| Sbjct 48897 TTTCATGCACACGCTCTACAGACGGTTTATTCTCAAGATAACTAAACATGAGACAAGCAA 48956 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 |||| | ||| | || |||||||| || | ||| |||||| || ||||||| Sbjct 48957 AATCTCTATGTAATCCTTCATCTCTGGAGATTAATTCATTTGAATGACACAAACCTGGCA 49016 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998 | ||||| ||||||||||||||||| |||| |||||| || || || || |||||||| | Sbjct 49017 TTAATCCACGTTTTTTTAACCAAAAGATTGAAGCAAAAGAACCAGAGAAAAATATTCCTT 49076 Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT-ATCCAT 14057 |||| || ||||| || || | ||||||||||| ||||| || || ||| | |||||| Sbjct 49077 CAACAGCGGCAAAAGCAATAATACGTTCTCCAAAAGATGCATTCTT-ATCGTTAATCCAT 49135 Query 14058 TTTCTAGCCCATTCAGAtttttttttAATAAAATC-CATTGTTTCAATAGCATT-AAATA 14115 || |||||| |||| || || || ||||| || | | | | || |||||| ||| Sbjct 49136 CTTAAAGCCCAATCAGCCTTCTTCTTGATAAATTCAAACTCTGTTAA-AGCATTGAAAAG 49194 Query 14116 AATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14175 |||| ||| || | ||| || ||||| ||||| | | |||||| ||| Sbjct 49195 CTTATTTCTT-TCATCAGTGTCACGGATATATGTTTCAATTAACTTGGAATACATCTCAC 49253 Query 14176 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTA 14235 || || || |||||||| || ||||| ||||||||| | | ||||| | ||| | Sbjct 49254 TATGAATATTCTCCATAGCAATTTGAAATCCATAAAAGAAACGTGCTTCAGGGACTTGGA 49313 Query 14236 CTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAA 14295 |||| |||||||||| ||||||||||||| || || ||||| ||| ||||| | Sbjct 49314 CTTCTTTTGAAAATCTTTCAACCAAATTTTCATTGACAATTCCATCGGAAGCAGCAAAGA 49373 Query 14296 ATGC 14299 | || Sbjct 49374 AGGC 49377 >seq1 Length=6158768 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139047 TGGTGTTTTACATACAAAATTTTTAATTTCGGATGAGTTAAATGCATATATTGGAAGCGC 139106 ||||||||||||||| ||||||| ||| ||| | | || |||||||| || || Sbjct 2809875 TGGTGTTTTACATACGAAATTTTGGATTGTTGATCAAAAACATATTTATATTGGTAGTGC 2809816 Query 139107 TAATATGGATTGGAGGTCTCTATCTCAAGTTAAAGAACTTGGTATAGGCATTTACAATTC 139166 ||||||||||||| || || || |||| || ||||||||| | ||| | ||| Sbjct 2809815 AAATATGGATTGGAAATCATTAACTGAAGTCAAGGAACTTGGTGTCTTAATTGAAGATTG 2809756 Query 139167 TTCATGTTTGGTAATGGATTTAATAAAAATCTTTA 139201 ||| ||||| | | |||||| ||||| |||| Sbjct 2809755 TTCCTGTTTAGCACATGATTTACATAAAATATTTA 2809721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479717146154000