Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq39 242 4e-59 >seq39 Length=206625 Score = 242 bits (268), Expect = 4e-59 Identities = 531/785 (68%), Gaps = 18/785 (2%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTT-T 13370 ||||||||| |||| || | |||| | || |||| | | ||||| ||||| | | Sbjct 48602 TAAAAATCAGCATCCAAGGTAAAAGTACGTTCTTCTTCAGTGCACATAAC-CCCATATCT 48660 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 |||||||||| |||| | |||||||| || || || || ||||| | ||| | ||| | Sbjct 48661 TTGATATTCAGAAACTTTCTTTTCAAAGAAATTTGTCTTTCCTTCAATTGAAAGGTTTAC 48720 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCT-AGTTCTAATAATA 13489 ||| ||||| ||||||||| || || | | | ||| | || | ||||| ||| | Sbjct 48721 CATGAAATCAAATGGATTT-TTAACCTTATAAATTTTTGGCATGTTTAGTTCAGTTAAAA 48779 Query 13490 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13549 |||||||| | | ||||| || | ||||||| |||||||||| || | | Sbjct 48780 GGTGATCAGCAACATATTCAATGTAGGTACACATTAATCTTGAATTCATACCAATCATAT 48839 Query 13550 TTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609 ||||||| || ||||||| |||| || || || ||||| | || |||| | Sbjct 48840 CAACAGGAAGAGCATCAGTTAAATATTCCTTCTCAATTTCGACAGCAT---TTCTAATTA 48896 Query 13610 TCTTA---ATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 13666 | | | | | || ||| || || | |||| |||| || | ||| |||| Sbjct 48897 TTTCATGCACACGCTCTACAGACGGTTTATTCTCAAGATAACTAAACATGAGACAAGCAA 48956 Query 13667 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13726 |||| | ||| | || |||||||| || | ||| |||||| || ||||||| Sbjct 48957 AATCTCTATGTAATCCTTCATCTCTGGAGATTAATTCATTTGAATGACACAAACCTGGCA 49016 Query 13727 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 13786 | ||||| ||||||||||||||||| |||| ||| || || || || || |||||||| | Sbjct 49017 TTAATCCACGTTTTTTTAACCAAAAGATTGAAGCAAAAGAACCAGAGAAAAATATTCCTT 49076 Query 13787 CAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATT 13846 |||| || ||||| || || | ||||||||||| ||||| || || | |||||| Sbjct 49077 CAACAGCGGCAAAAGCAATAATACGTTCTCCAAAAGATGCATTCTTATCGTTAATCCATC 49136 Query 13847 TTCTAGCCCATTCAGAtttttttttAATAAAATC---CATTGTTTCGATTGCATTGAATA 13903 || |||||| |||| || || || ||||| || | |||| | |||||||| | Sbjct 49137 TTAAAGCCCAATCAGCCTTCTTCTTGATAAATTCAAACTCTGTT---AAAGCATTGAAAA 49193 Query 13904 -AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 13962 | || ||| || | ||| || ||||| ||||| | | |||||| ||| Sbjct 49194 GCTTATTTCTT-TCATCAGTGTCACGGATATATGTTTCAATTAACTTGGAATACATCTCA 49252 Query 13963 GAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14022 || || || || ||||| || ||||| |||||||| | | ||||| | ||| Sbjct 49253 CTATGAATATTCTCCATAGCAATTTGAAATCCATAAAAGAAACGTGCTTCAGGGACTTGG 49312 Query 14023 ACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAA 14082 || || |||||||||| |||| |||||||| ||||| ||||| ||| ||||| Sbjct 49313 ACTTCTTTTGAAAATCTTTCAACCAAATTTTCATTGACAATTCCATCGGAAGCAGCAAAG 49372 Query 14083 AATGC 14087 || || Sbjct 49373 AAGGC 49377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478577971928400