Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq15 704 0.0 seq5 562 4e-155 seq39 228 1e-54 seq1 86.0 8e-12 >seq15 Length=622252 Score = 704 bits (780), Expect = 0.0 Identities = 1440/2119 (68%), Gaps = 51/2119 (2%) Strand=Plus/Minus Query 70840 TAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG 70899 || ||||| || || |||| ||| | ||||||| | ||||||||| | | | Sbjct 204860 TAATACATTCCAGTCTTTAAACCACGTTTCCATCCATGGAAATGCATAGAACTACATACG 204801 Query 70900 GAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCC 70959 | ||| | || | |||| |||| ||| | || ||| |||||| ||| | ||||| Sbjct 204800 GCATATGTTGGTTTTGCTACATGAAGATTAAGTGATTGAGATTGATCAATGTAAGCTCCA 204741 Query 70960 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT 71019 | || |||||||| | ||||| |||||| | ||||||||||| ||| ||||||| | Sbjct 204740 CGATCAGCAGCCATCTCAATGATATCCTTTTGAGAAATTTCCCAAACAGTCTTATAAAGT 204681 Query 71020 CGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATC 71076 ||| |||| | ||| | | |||| ||||| || ||| || || ||||| Sbjct 204680 TCCTTGATATGTGTTGGTATTCCAGCGATATTTTGAATTGAACCATTATTTGATATAATT 204621 Query 71077 CTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGA 71136 ||| | | |||||| |||| || || || | ||| || |||| ||||||||| Sbjct 204620 TCATTCATAACTTCTTCACTCCACAAGTTAAGGTCAATCAAATCTTTAAGAAGATGAGGA 204561 Query 71137 TTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGT 71196 ||||| | ||| || |||||||| | || | ||| || | |||||| ||||| ||| Sbjct 204560 TTAACAATTTGGAAGTCTCCAGAGAGAACACGACGTGTAAATATATTAGAAGTATATGGT 204501 Query 71197 TCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 71256 || | || |||||||| || | |||||| ||||| || ||||| ||||| || || | Sbjct 204500 TCAATAGATTCATTATTCCCTAGAATTTGGGCAGTAGAAGCAGTTGGCATTGGAGCTAAT 204441 Query 71257 AATAGACTATTTCTAAGACCATGTGATCGG--ATTTTATCTTTTAGAGATT---CCCAAT 71311 || || |||||| | |||||| | || ||||| || || | ||| |||||| Sbjct 204440 AAAAGGGAATTTCTTACACCATGC--TTGGCAATTTTTTCCTTCA---ATTTAGCCCAAT 204386 Query 71312 TCCA-AAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCG 71370 ||| ||| | | |||| || || || ||| | | Sbjct 204385 CCCATAAGTTACT-TGGTGTTACATTCCACATATCATATTGTAAAATTCCTTTAGAAACT 204327 Query 71371 TATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCT 71430 |||||| |||||| || |||||||| || || | |||| ||| || ||||| Sbjct 204326 GGTGATCCATGATATGTTTCATATGGTCCATCCTTAGCAGCTAATTCGCAGGAAGCCTCC 204267 Query 71431 AATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCG-GGCT 71489 || ||||||| |||||| ||||| ||||| |||||||| || |||| || ||| || Sbjct 204266 AAAGCTCCATGATAAATAGTTTCAAAAATTTTCTTATTAAGTTCTTTGGC--CCGAGGAG 204209 Query 71490 ATCA-AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGA 71548 || |||||||| | | || ||||| || |||||||||||||| ||||| || | Sbjct 204208 ATGTGAATGGATATCTCATAAGCATAAAACAATCAGCTAATCCTTGAACACCAATTCCAA 204149 Query 71549 TAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTA 71608 | || | ||||| || || | | || || || | |||||||||||| | ||| | Sbjct 204148 TGGGGCGATGTCTAAAGTTTGATTTCTTTGCCTCAGGTACAGGATAATAATTGACATCAA 204089 Query 71609 TAATTTTATTGAGATTTCTGACTATTA-CTTTGACCACATCCTTTAGTTTGAGAAAATCA 71667 |||||||||| | |||| | | | | ||| || ||| | |||| ||||| | Sbjct 204088 TAATTTTATTCAAATTTTTAGCAAGAATCTTAGAA-ACAAGATGAAGTTGATTAAAATTA 204030 Query 71668 AATC-----TCCCATCTATTACAAACA-CG------TTCAAGGCAACAGATGCCAGATTA 71715 ||| | || | | | | | || || ||||| |||| ||| | | |||| Sbjct 204029 AATGATGGTTGCCCTTTCTCAATATCAACGAATCTATTCAATGCAATTGATCCTAAATTA 203970 Query 71716 CAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACAC 71775 ||||| || || |||| | | | ||||| | ||||||||| ||||||||| ||| Sbjct 203969 CAAACAGCAACTTCATCTGGAGCACAATATTCAACAATTTCAGTACAAAGATTAGAACAT 203910 Query 71776 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATA 71835 || || ||||| || |||||||||||||| ||| | ||||| |||||| |||| ||| Sbjct 203909 TTAATTGTTCCCAAGTTTTGTTGATTACTTTTTCTATTACAATGATCCTTGTAAACCATA 203850 Query 71836 AACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 71895 | ||||| |||||||| || ||| ||| |||| || ||| | || | |||||| Sbjct 203849 TATGGAGTTCCAGTTTCTATTTGACTTTCACAAATCTTTTGCCAAATAACCCTAGCCTTG 203790 Query 71896 ATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCT 71955 ||| || |||| | ||| || | || || | ||| || ||| ||| || || || Sbjct 203789 ATTTGTTTTCTGTAACGCTTCTCAGTCTCATACTTTGTGTACAATTTTTCAAATTCATCC 203730 Query 71956 CCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCA 72015 |||||| || |||||||| |||||||||| ||||||||||||||||| | | ||| Sbjct 203729 CCCCAACAATCTTCTAATCCTGGACATTCATGAGGACACATCAATGACCAATATGAATCT 203670 Query 72016 TCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGT 72074 | | || ||||||||||| | |||||||| ||| | | | ||| |||| ||| | | Sbjct 203669 TTTTCAACACGTTTCATAAACAAATCAGGAACCCATAAACC-ATAGAATAAATCACGAGC 203611 Query 72075 TCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 72134 | | ||| || ||||||||| || |||||||| | || |||||||||| | ||| Sbjct 203610 ACGTTCCTCTTCTGGTCCTGTATTTTTCTTAAGATCCAAAAATTCCATAATATCTGCATG 203551 Query 72135 CCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTA 72194 ||| |||||||| || || || | | |||| || | || ||||| || ||||| | || Sbjct 203550 CCATGGTTCCAAATAAATTGCAAAAGCTCCAGGTCTCTTATTTCCACCTTGATCAACATA 203491 Query 72195 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT 72254 ||| || || || || |||||||||||||||| | | ||||| |||| ||||| || Sbjct 203490 TCTTGCAGTATTGTTGAAAACTCTCAACATTGGTACCAATCCATTTGATGTTCCATTAGT 203431 Query 72255 CCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCT 72312 || ||| | |||| |||||||||| | || ||| || || || || || Sbjct 203430 TCCACCAATAAATGATCCATTGGCACGAATACAATGAACATT--TAATCCAATACCTCCA 203373 Query 72313 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 72372 || ||| || ||||| || ||| |||| || |||||||| || || || ||| ||| Sbjct 203372 GCAGATTTTGAAATTAAAGCACATTGTTTCAATGTATCATAAATCCCTTCAATAGAATC- 203314 Query 72373 TCCATC--ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 72430 |||| | |||||| || ||||| ||||| ||| ||||| | ||||| ||||||| Sbjct 203313 TCCAGCCATTGTTAA-TAAGAAACATGAAGACAATTGTGGACGAGTTGTTCCTGCATTAA 203255 Query 72431 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAG 72490 ||| || |||||||| || ||||||||||| | |||| | |||||| || || ||| Sbjct 203254 ATAGTGTTGGAGAAGCATGTGTAAACCATTTCTGTGACATAAAATTGTATGTTTCGATAA 203195 Query 72491 CTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTC 72550 |||| || ||||| | ||| || || || || || | ||| | | ||| || |||| Sbjct 203194 CTGAATCAATATCTTCTCCATGAATACCAACAGCAACTCTCATAAGTAAATGTTGTGGTC 203135 Query 72551 TTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 72610 ||||| | || || || || ||||| || | || || ||| |||||||| || |||| Sbjct 203134 TTTCAGCAATTTTCTTGTTGATTTTTAAAAGATAAGAACGTTCTAAAGTTTTGAATCCAA 203075 Query 72611 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATT 72670 | | ||| |||||||| || |||| ||| | ||||| ||||| || || || Sbjct 203074 AGAATGAGTAGTCAAAGTCTCTGTCATAAACGATAGCAGAATTAAGTTTGTCAGCATGTT 203015 Query 72671 TGTTAACTATATCCATG-GTGATACTTGA--AATAATCGGAGAATGTTTCCCATTTTTAG 72727 | | || || || || || | ||| | ||| || || | |||| ||| | || Sbjct 203014 TTTGAATTACAT---TGTATGTTTCTTCACTAATCATTGGTGTATGTACACCAGTAATAT 202958 Query 72728 GATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGT 72787 || | ||| | | | || ||| ||||| ||| ||| ||||||| || | Sbjct 202957 CATGACGATAATGATACAGGTCACTCATAACTTCTGAGAATGTTTTCTTTGTTTGTTTAT 202898 Query 72788 GTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTAC 72847 | | || || | || ||||| || || | ||| |||||||| ||||| |||| || | Sbjct 202897 GCATGTTGGAGATAGCGATTCTTGCTGCCAAAATAGCATAATCAGGATGAAGTGTTGT-C 202839 Query 72848 AAG-TGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATAT 72906 | | | |||||| | ||||| || || | |||||||| || || | || || || ||| Sbjct 202838 ATGTTTGCTGCTGTCTCTGCGGCAAGGTTATCCAATTCAACGGTAGAAACACCTTTGTAT 202779 Query 72907 ATTCCTTGGATAACCTTCA 72925 | ||||||||||| |||| Sbjct 202778 AAACCTTGGATAACTTTCA 202760 >seq5 Length=1449561 Score = 562 bits (622), Expect = 4e-155 Identities = 1419/2136 (66%), Gaps = 69/2136 (3%) Strand=Plus/Minus Query 70827 TTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 70886 |||||| | || ||| ||||| |||||||||| ||| || |||||||| |||||| || Sbjct 1213741 TTTCGTTCTTAAATAATACATCCCTGTTTTTAAACCAAGTTTCCATCCGCGAAAATGTAT 1213682 Query 70887 ---ACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTG 70943 ||| || | | || | || | |||| | |||||| | || || ||| Sbjct 1213681 GGAACTACATATTCCGTAAGAT---GGTTTTGCTACATAAATATTAAGAGATTGGGATTG 1213625 Query 70944 ATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCA 71003 ||| || || ||||| || ||||||||||| | ||||| |||||| | |||||||| Sbjct 1213624 ATCAATAAATGCTCCTCTATCTGCAGCCATATCAATGATGTCCTTTTGAGATATTTCCCA 1213565 Query 71004 AATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTGTATTCTGA---ATGGATC 71059 | || ||||| || || |||||||| ||||||| | || | || || |||| Sbjct 1213564 TACGGTCTTATACAAATC-CTTAATATGATCTGGAATTCCTTTAATATGTTTTATAGATC 1213506 Query 71060 CACCATCTGCAATAATCCTATT--TTTGATC--TCTTCATTCCATAATTTTCTCTCGGTT 71115 || || ||||| ||| ||| || || |||||||| || ||| || Sbjct 1213505 CATTAT----AATAAATTAATTGGTTTAATAATTCATCATTCCACAAATTTAATTCAACC 1213450 Query 71116 AAAAC-TCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGT 71174 ||| | | ||| || || || || || |||||||| |||||||||||||| | | | Sbjct 1213449 AAATCGTGTAAA-AGGTGTGGGTTTACCACTTGAAAATCTCCAGACAATACCCGTCTCAT 1213391 Query 71175 GTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGA 71234 || | ||| ||||| ||||| | |||||||||||| || ||||||||||||||||| Sbjct 1213390 ATACAAATTTGAAGTATAAGGTTCAAATGACTCATTATTACCAAAAATTTGAGCAGTTGA 1213331 Query 71235 TGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATC 71294 ||| || ||||| || || ||||| | |||||| | ||||| | || ||||| || Sbjct 1213330 TGCTGTTGGCATTGGAGCTACCAACAATGAATTTCTTATACCATATTTTCTAATTTTTTC 1213271 Query 71295 TTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNN 71354 ||||| || ||||| ||| | || ||| ||| Sbjct 1213270 TTTTAATAATGACCAATCCCATAAATTACTTGGAGTAACTTTCCATAAATCATATTGTAA 1213211 Query 71355 NATGCC----GTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGG 71410 ||||| | ||| || | | ||| |||| || || || || || | || ||| | Sbjct 1213210 AATGCCACGAGATACAAGAGAA----CCTTCATAAGTTTCATAAGGACCATATTCTTCAG 1213155 Query 71411 CTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGA 71470 ||| |||||| || || ||||| |||| ||| || ||||| || || || || || | Sbjct 1213154 CTAATTCACATGAAGCTTCCAATGCACCATGATATATTGTTTCAAATATTTTTTTGTTTA 1213095 Query 71471 GATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATC 71530 ||||| |||| | | | | ||||| |||| || ||||| | ||||| |||| Sbjct 1213094 AATCTTTAGCTTGTGAAGAAGCGTAGGGATATCTTAAAAGTATAAAAGTATCTGCCAATC 1213035 Query 71531 CTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAG 71590 ||||||| ||||| || ||||| | ||| || |||| || || || |||| | | Sbjct 1213034 CTTGAACACCAATGCCAATAGGACGATGTTTCATATTTGATATACGAGTTTCTTCTAATG 1212975 Query 71591 GATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCT 71650 |||||||||| |||||||| || ||||| | |||| | || | ||| | | | Sbjct 1212974 GATAATAATTTATATCTATTATCTTATTCAAATTTTTTGTTAAAAGTTTAGTAATTTTGT 1212915 Query 71651 TTAGTTTGAGAAAATCAAATC------TCCCATCTATT------ACAAACACGTTCAAGG 71698 |||| ||||| ||| |||||||| | ||||| || || | Sbjct 1212914 GAAGTTGTTTAAAATTGAATGAAGTAATCCCATCTTCTTTTTCAACAAATCTATTTAAAG 1212855 Query 71699 CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAG 71758 ||| |||| ||| ||||| || || | ||||| | | | |||||| | |||||| | Sbjct 1212854 CAATAGATCCCAAGTTACATACAGCGATTTCATTTGAAGAAGAATATTGAACAATTTCTG 1212795 Query 71759 TGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 71818 | || | ||| ||| || ||| |||||||||| | ||||||||| || ||||| Sbjct 1212794 TACATAAATTTGAACATTTTATGATTCCTAAATTATTTTGATTACTTTTACGATTACAAT 1212735 Query 71819 CATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 71878 ||| ||||||| || | || || ||||||||||| ||| ||| || || || Sbjct 1212734 GATCTTTATAAACCATGTAAGGTGTTCCAGTTTCAATTTGACTTTCACATATTTTTTGCC 1212675 Query 71879 AGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATA 71938 ||| | ||| ||||| ||| | | | || | ||||| |||| |||| ||||| Sbjct 1212674 AGAGCATTCGTGCCTTGATTTGACTTCTATAACGTTTTTCATTTTCATATTTAACATATA 1212615 Query 71939 ATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCA 71998 | ||| || || ||||||||| ||| || | || |||||||| | |||||||||| Sbjct 1212614 AAGTTTCAAATTCTTCTCCCCAACTATTATCAAGACCTGGACATTCGTGAGGACACATCA 1212555 Query 71999 ATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 72056 ||||||| | ||| | ||| || ||||||||||| | |||||||| ||| | | | Sbjct 1212554 ATGACCAATAAGAATC--CCTTTCAACACGTTTCATAAATAAATCAGGAACCCATAAACC 1212497 Query 72057 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 72116 ||||| ||| | | | | ||| || |||||||| || ||||||| | || Sbjct 1212496 ATAAAATAAATCACGAGCACGTTCCTCTTCCGGACCTGTATTTTTCTTAAGATTTAAAAA 1212437 Query 72117 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176 | |||||| | |||||| ||||| | || || || | |||| || | ||| || Sbjct 1212436 TTGAAAAATATCTGCATGCCATGGTTCAATATAAATAGCAAATGCTCCTGGTCTTTTATT 1212377 Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TAATAC 72235 ||| || ||||| | || | ||| || | |||| | |||| ||||| |||| |||| | Sbjct 1212376 TCCACCTTGATCAACATAACGAGCAGTATCATTAAATACTCGTAACATAGGAACTAAT-C 1212318 Query 72236 CATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTG 72295 |||| || ||||| || || ||| | ||| ||||||||||||| ||| Sbjct 1212317 CATTTGAAATTCCATTTGTTCCACTAATAAAAGATCCTGTGGCACGAATATTATTAACAC 1212258 Query 72296 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 72355 |||||| | ||| ||||| ||| || |||| || || ||| | |||||||| | Sbjct 1212257 TTAGACCAACTCCACCTGCACCTTTTGAAATTATAGCACAATTTTTAAGAGTATCATAAA 1212198 Query 72356 TGCCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 72414 | || ||||| |||||||| || |||||| || |||||| |||| ||| Sbjct 1212197 TACCTTCTATTGAATCATCCACCATTGTTAA-TAAAAAACATGATGACAATTGTCCTTTT 1212139 Query 72415 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGA 72474 ||||| |||||| |||| || || || || || ||||||||||| ||||| || | Sbjct 1212138 GGTGTTCCTGCATTATATAATGTTGGTGATGCATGTAAAAACCATTTTTGAGACA-TACA 1212080 Query 72475 -TTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCAT 72533 || || || |||| | ||||| ||||| | ||| || || || || |||||||| Sbjct 1212079 GTTATATGTTTCAAGTACAGATTCAATATCTTCTCCATGAATACCAACAGCAACACGCAT 1212020 Query 72534 TAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTC 72593 || | ||| || ||||||||||| || | |||| ||| | ||||| || ||| ||| Sbjct 1212019 AAAAAGATGTTGTGGTCTTTCAACAATACAGCTATTAATTCTTAACAAATATGATCGTTC 1211960 Query 72594 CAAAGTTTTAAAACCAAA-ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAAT 72652 ||| |||||||||||||| | ||| || || |||| || | | || | |||| Sbjct 1211959 CAACGTTTTAAAACCAAAGAAAGTAAAATTGTAA-TCTCTTTTATGATCGATTGCTGAAT 1211901 Query 72653 TGAGTTTATCCTTATATTTGT---TAACTATATCCATGGTGATACTTGAAATAATCGGAG 72709 | | | || |||| ||| | ||| || || | | ||| |||||| ||| Sbjct 1211900 CTAATATTTCTTTATGTTTTTGAATAATTAAATTAGTTTTTTCACT---AATAATTGGAC 1211844 Query 72710 AATG---TTTCCCATTTTTAGGATTAACATAGTTGAATA-AATC-CTCCATCACTTCACT 72764 ||| ||| |||||| ||| | || || ||| |||| ||||| |||| Sbjct 1211843 TATGTCTTTTTGTATTTTT---ATTTATATTATT--ATACAATCTATCCATAACTTTTGA 1211789 Query 72765 AAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGC 72824 ||| | || || |||| || || | |||||| | || ||||| | || | |||| | Sbjct 1211788 AAAAACTTCTTCCGTTTGTTTATGCATATTTGAAATAGCAATTCTAGAAGCCAAAATGCC 1211729 Query 72825 ATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTC 72884 |||||| |||||| ||| | | | || || | ||| ||||| | | || | ||| Sbjct 1211728 ATAATCAGGATGTATAACAGTTCTATTAGCAGCAACTTCAGCTGCTAAGTTATCAAGTTC 1211669 Query 72885 TACCGTTGTTACTCCATTATATATTCCTTGGATAAC 72920 || || ||||| || ||||||| |||||| | ||| Sbjct 1211668 AACAGTAGTTACACCTTTATATAATCCTTGAACAAC 1211633 >seq39 Length=206625 Score = 228 bits (252), Expect = 1e-54 Identities = 541/810 (67%), Gaps = 12/810 (1%) Strand=Plus/Plus Query 41716 TCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAG---ACATAACTCCCAT 41772 || |||||| ||| |||| || | |||| | ||||||| || ||||||| ||||| Sbjct 48598 TCATTAAAAATCAGCATCCAAGGTAAAAGTACGTTCTTCTTCAGTGCACATAAC-CCCAT 48656 Query 41773 TT-TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATAT 41831 | |||| |||||| || ||||| || ||||| ||||||||||| | ||| | | Sbjct 48657 ATCTTTGATATTCAGAAACTTTCTTTTCAAAGAAATTTGTCTTTCCTTCAATTGAAAGGT 48716 Query 41832 TTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAA 41891 || ||||||||||||| ||||| |||| |||||||||||| | | ||||| | Sbjct 48717 TTACCATGAAATCAAATGGATTTTTAACCTTATAAATTTTTGGCATGTTTAGTTCAGTTA 48776 Query 41892 TCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 41951 | ||| || | |||| || || || ||| | | ||||||| || || | Sbjct 48777 AAAGGTGATCAGCAACATATTCAATGTAGGTACACATTAATCTTGAATTCATACCAATCA 48836 Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 | ||| |||||||| |||| | | |||| | ||||| ||| || | | | || Sbjct 48837 TATCAACAGGAAGAGCATCAGTTAAATATTCCTTCTCAATTTCGACAGCATTTCTAAT-- 48894 Query 42012 TAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 42069 || || | || ||| || |||| || | | || ||||||| | ||| || Sbjct 48895 TATTTCATGCACACGCTCTACAGACGGTTTATTCTCAAGATAACTAAACATGAGACAAGC 48954 Query 42070 GAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 42129 ||||| | || | || |||||||| |||||||| || ||| | || || Sbjct 48955 AAAATCTCTATGTAATCCTTCATCTCTGGAGATTAATTCATTTGAATGACACAAACCTGG 49014 Query 42130 CATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCC 42189 ||||| ||||| ||||| | |||||| || || ||||| || ||||| || || ||||| Sbjct 49015 CATTAATCCACGTTTTTTTAACCAAAAGATTGAAGCAAAAGAACCAGAGAAAAATATTCC 49074 Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT-GT--ATCCA 42246 ||| || || ||||| ||||||| | |||||| || ||| | | || || ||||| Sbjct 49075 TTCAACAGCGGCAAAAGCAATAATACGTTCTCCAAAAGATGCATTCTTATCGTTAATCCA 49134 Query 42247 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306 || ||||||||| |||||||| || | | | | | | || ||||| || || Sbjct 49135 TCTTAAAGCCCAATCAGCCTTCTTCTTGATAAATTCAAACTCTGTTAAAGCATTGAAAAG 49194 Query 42307 ATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGA 42366 | ||| |||||| | | || | |||||| || || || |||||| || Sbjct 49195 CTTATTTCTTTCATCAGTGTCACGGATATATGTTTCAATTAACTTGGAATACATCTCACT 49254 Query 42367 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTAC 42426 |||||| || || || || || |||||||| || || | | || || | || || || Sbjct 49255 ATGAATATTCTCCATAGCAATTTGAAATCCATAAAAGAAACGTGCTTCAGGGACTTGGAC 49314 Query 42427 TTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAA 42486 |||| | |||||| |||| | |||||||| || || ||||| || || ||||| || Sbjct 49315 TTCTTTTGAAAATCTTTCAACCAAATTTTCATTGACAATTCCATCGGAAGCAGCAAAGAA 49374 Query 42487 CGCCAATACATGTTTTATAAAATATTTTTC 42516 || | ||| | |||||| ||| |||| Sbjct 49375 GGCTAGGACACGAGATATAAAGTATCTTTC 49404 >seq1 Length=6158768 Score = 86.0 bits (94), Expect = 8e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 36476 ACCCAATTCCTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATAAAT 36535 ||| | ||||||||| | ||||| |||| |||||||||| || || || || | |||||| Sbjct 2809773 ACCAAGTTCCTTGACTTCAGTTAATGATTTCCAATCCATATTTGCACTACCAATATAAAT 2809832 Query 36536 ATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCC 36577 |||| | | |||| ||||||||||| ||||| | ||| || Sbjct 2809833 ATGTTTTTGATCAACAATCCAAAATTTCGTATGTAAAACACC 2809874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671124015475600