Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 seq547 104 2e-17 seq29 87.8 2e-12 >seq5 Length=1449561 Score = 114 bits (126), Expect = 1e-20 Identities = 630/987 (64%), Gaps = 82/987 (8%) Strand=Plus/Minus Query 156492 GGTTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTACTGTGAA--- 156548 |||| || |||||||| || || ||||| || ||||||| | ||||||| |||| Sbjct 1213430 GGTTTACCACTTGAAAATCTCCAGACAATACCCGTCTCATATACAAATT----TGAAGTA 1213375 Query 156549 -ACGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTAC 156607 | |||||||||||||| || || | ||||| || || | || || ||||| Sbjct 1213374 TAAGGTTCAAATGACTCATTATTACCAAAAATTTGAGCAGTTGATGCTGTTGGCATTGGA 1213315 Query 156608 GCCACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAG 156667 || || | ||||||||| | || || |||||| || ||| ||| || |||||| Sbjct 1213314 GCTACCAACAATGAATTTCTTATACCATATTTTCTAATTTTTTCTTTTAATAATGACCAA 1213255 Query 156668 TCCCATAACGAAGTCG--GTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCG 156725 |||||||| | | | ||| | ||||| ||||| ||||| || || || || Sbjct 1213254 TCCCATAAATTACTTGGAGTAAC--TTTCCATAAATCATATTGTAAAATGCC-ACG---- 1213202 Query 156726 CTTTGCTACCGGCAAACGTGCTATAAGGCTCACTAA----CAGAT------GCCAGTTCG 156775 | ||| | ||| | | ||||| ||| ||| || || || | ||| Sbjct 1213201 ---AGATACAAGAGAACCTTC-ATAAGTTTCA-TAAGGACCATATTCTTCAGCTAATTCA 1213147 Query 156776 TAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACG 156835 | || || | ||| ||||||| | |||||| |||| ||| || || | | Sbjct 1213146 CATGAAGCTTCCAATGCACCATGATATATTGTTTCAAATATTTTTTTGTT---TAAATCT 1213090 Query 156836 GCAGCAT-CGCTCA--CGTACGG-TATGCGCAACATAACAAATGCATCGGCCAAACCTTG 156891 ||| | | | |||| || ||| | || | | ||| | ||| ||||| ||||| Sbjct 1213089 TTAGCTTGTGAAGAAGCGTAGGGATAT-CTTAAAAGTATAAAAGTATCTGCCAATCCTTG 1213031 Query 156892 AATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTC----AATAG 156947 || |||||||| || |||||||| |||||| || | | |||||| ||| | Sbjct 1213030 AACACCAATGCCAATAGGACGATGTTTCATATTTGA---TATACGAGTTTCTTCTAAT-G 1212975 Query 156948 GGTAGAAATTGCGATCAATAATTTTATTCAAACTATCCACTACATGTTTGACCACAGTGT 157007 | || |||| ||| || || ||||||||| | | || | |||| | ||| Sbjct 1212974 GATAATAATTTATATCTATTATCTTATTCAAATTTTTTGTTAAAAGTTTAGTAATTTTGT 1212915 Query 157008 GCAATAGTTGAAAATCAA---AAGTA---------TCATTATTGATATATTTATTGACGG 157055 | | | ||| ||||| | ||||| || || | | | || |||| | | Sbjct 1212914 GAAGTTGTTTAAAATTGAATGAAGTAATCCCATCTTCTTTTTCAACAAATCTATTTAAAG 1212855 Query 157056 CAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCG 157115 |||| || | | |||||||| || |||| | | | ||||||| || ||||| | Sbjct 1212854 CAATAGATCCCAAGTTACATACAGCGATTTCATTTGAAGAAGAATATTGAACAATTTCTG 1212795 Query 157116 CACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAG 157175 ||| ||||| |||||||| | ||| ||||| ||||||| ||||| || || ||| Sbjct 1212794 TACATAAATTTGAACATTTTATGATTCCTAAATTATTTTGATTACTTTTACGATTACAAT 1212735 Query 157176 CGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTC---TATGATGTTGC 157232 || || || | |||||| ||||| || ||||| |||| |||| ||| | |||| Sbjct 1212734 GATCTTTATAAACCATGTAAGGTGTTCCAGTTTCAATTTGACTTTCACATAT-TTTTTGC 1212676 Query 157233 ----GCATTAATGTAACCGCGGGCATTTGCTCGCGAAACTGGCCTTTATCCTCGTAATGT 157288 ||||| || || | ||||| | | | | ||| || | | || | Sbjct 1212675 CAGAGCATTCGTG---CCTTG---ATTTGACTTCTA---TAACGTTTTTCATTTTCATAT 1212625 Query 157289 TT---GTACCAGTATTCAAAGTCATCACCATACGTATCGTTGAGCTTAGGACACTCGTTA 157345 || || | |||||| || || || | ||| | || ||||| |||| | Sbjct 1212624 TTAACATATAAAGTTTCAAATTCTTCTCCCCAACTATTATCAAGACCTGGACATTCGTGA 1212565 Query 157346 GGACACATTAATGACCATATACCGTTTTC-TTCAACGCGTTTCATAAATATATCGGGAAC 157404 |||||||| |||||||| ||| | | |||||| ||||||||||||| ||| ||||| Sbjct 1212564 GGACACATCAATGACCA-ATAAGAATCCCTTTCAACACGTTTCATAAATAAATCAGGAAC 1212506 Query 157405 CCATAAAGCGTTCATCAAATCACGCGC 157431 ||||||| | | | |||||||| || Sbjct 1212505 CCATAAACCATAAAATAAATCACGAGC 1212479 >seq547 Length=3469 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | ||| | ||| | || || || ||||| |||||||| || Sbjct 1595 CCTCCACGAAGACGGAGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCAGAG 1654 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| |||||||| || ||| |||| |||||||| ||||| || || Sbjct 1655 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGATCTGGTGGG 1714 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| || ||| | | || | ||||| | ||||| ||| Sbjct 1715 ATTCCTTCTTTGTCTTGAATCTTGGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACT 1774 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | || || || || || || || || || |||||||| Sbjct 1775 TCAAGAGTAATTGTTTTTCCAGTTAAAGTCTTAACAAAAATTTGCAT 1821 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| || ||||||||||| || || ||||| Sbjct 1367 CCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAA 1426 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| ||||| || |||||| | || |||||||| || || ||||| Sbjct 1427 AGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGG 1486 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| ||| || | | || | || || | ||||| || Sbjct 1487 ATACCTTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACC 1546 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| ||| | ||||| || || || || || || || || |||||| || Sbjct 1547 TCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCATACCT 1597 >seq29 Length=268433 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| || ||||||||||| || || ||||| Sbjct 198316 CCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAA 198375 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| ||||| || |||||| | || |||||||| || || ||||| Sbjct 198376 AGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGG 198435 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| ||| || | | || | || || | ||||| || Sbjct 198436 ATACCTTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACC 198495 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| ||| | ||||| || || || || || || || || |||||| || Sbjct 198496 TCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCATACCT 198546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507002928799200