Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq100 116 7e-21 >seq100 Length=36487 Score = 116 bits (128), Expect = 7e-21 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 271737 AATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCT 271796 ||| |||||||| |||| ||||||||||| |||||||| ||||||||||||| ||||||| Sbjct 14680 AATTTGGCTCCGCGACCAGGACTCGAACCTGGGACCCAATGATTAACAGTCATTTGCTCT 14739 Query 271797 ACCGACTGAGCTATCACGGAATTA 271820 ||||||||||||||| ||||| || Sbjct 14740 ACCGACTGAGCTATCGCGGAACTA 14763 Score = 98.7 bits (108), Expect = 2e-15 Identities = 77/91 (85%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 273267 AAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 273326 || |||||||| || || || ||||||||| |||||||||||||||||||||||||||| Sbjct 14593 AAGATGGTCGGGGTAAGGGGATTCGAACTCCTGACATCCTGCTCCCAAAGCAGGCGCGCT 14652 Query 273327 ACC-AACTGCGCTACACTCCGTATTTAAATT 273356 ||| ||||||||| || ||| || ||||| Sbjct 14653 ACCGGACTGCGCTATACCCCGGTTTGAAATT 14683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896920506714400