Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq547 102 6e-17 seq29 102 6e-17 >seq547 Length=3469 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || || |||||||||||||||||||| | | |||| || Sbjct 1385 ACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCTTCA 1444 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||| ||||| ||||| || | ||||| ||||| |||| | |||||| |||||| | Sbjct 1445 AGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTGA 1504 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || ||| ||||| | ||| |||||| | || || || || | || ||||| || Sbjct 1505 ATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAGAGTGATTGTCTTT 1564 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||||||||| ||||| || ||||| Sbjct 1565 CCAGTTAAAGTCTTAACAAAAATCTGCAT 1593 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||||||||| ||||| || | ||||| || || | || | ||||||| Sbjct 1665 CATCTTCAAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGATCTGGTGGGATTCCTTCTT 1724 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| ||| || |||||| | | | ||| || | || || || || | |||| Sbjct 1725 TGTCTTGAATCTTGGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAA 1784 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||| || ||||||||||| ||||| |||||||| Sbjct 1785 TTGTTTTTCCAGTTAAAGTCTTAACAAAAATTTGCAT 1821 >seq29 Length=268433 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || || |||||||||||||||||||| | | |||| || Sbjct 198334 ACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCTTCA 198393 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||| ||||| ||||| || | ||||| ||||| |||| | |||||| |||||| | Sbjct 198394 AGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTGA 198453 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || ||| ||||| | ||| |||||| | || || || || | || ||||| || Sbjct 198454 ATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAGAGTGATTGTCTTT 198513 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||||||||| ||||| || ||||| Sbjct 198514 CCAGTTAAAGTCTTAACAAAAATCTGCAT 198542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354769773827880