Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq122 109 6e-19 >seq122 Length=25786 Score = 109 bits (120), Expect = 6e-19 Identities = 182/263 (69%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 ||||| || || |||||||||| | ||| | ||| | || | | || || |||| | Sbjct 17567 CCGTGGGTCAGGTGGCCGCCGCGGGCCAGGTCCATGCCCAGGAAGGTGTCGCCGGGCTGC 17508 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 || || || ||| || |||||||| || || || ||||| || || || ||||| ||| Sbjct 17507 AGCAGGGCGAAGTACACGGCCTGGTTGGCCTGGGAGCCGGAGTGCGGCTGCACGTTGGCG 17448 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117 | | | | ||||| | || || || || || ||||| | ||||| | ||| | Sbjct 17447 TAGTCGGCGCCGAACAGCTGCTTGGCGCGGTCGATGGCCAGTTGCTCGACCACGTCGACG 17388 Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAA 7177 | | ||||||| || || || || |||||||| || || || || ||||||||||| | Sbjct 17387 TATTCGCAGCCACCGTAGTAGCGCTTGCCCGGGTAGCCTTCGGCGTACTTGTTGGTCAGT 17328 Query 7178 ATAGAACCCTGTGCTTTCATAAC 7200 | || || || |||| ||| || Sbjct 17327 ACCGAGCCTTGAGCTTCCATCAC 17305 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 6497 ACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGAATACCCGGGAAGATAGCA 6556 || || || || ||||| || || ||||||||||| || | || ||||||| || Sbjct 17995 ACGGCCTTGGCGGCGATGACGTGCTCCAGCGGGCCGCCCTGCAGGCCGGGGAAGACGGCC 17936 Query 6557 GAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATGAGGCCACCACGAGGGCCG 6616 || || | ||||| ||||| || || ||||| || || || | ||| || || || ||| Sbjct 17935 GAGTTGATCTTCTTCGCGATGTCGGCGTCGTTGGTCAGGATCATGCCGCCGCGTGGACCG 17876 Query 6617 CGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGC 6654 |||| || || || || || || || || |||||||| Sbjct 17875 CGCAGGGTCTTGTGGGTGGTGGTGGTGACGACGTCGGC 17838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555350634907600