Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq39 192 5e-44 >seq39 Length=206625 Score = 192 bits (212), Expect = 5e-44 Identities = 483/725 (67%), Gaps = 8/725 (1%) Strand=Plus/Plus Query 12861 TTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTT 12920 |||||||||| |||| | |||||||| || ||||| |||||||| | |||| ||| Sbjct 48660 TTTGATATTCAGAAACTTTCTTTTCAAAGAAATTTGTCTTTCCTTCAATTGAAAGGTTTA 48719 Query 12921 CCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTA-CACCCTAATTCTAGTAAC 12979 |||| ||||| || |||||||| ||| || | ||||| || | | | ||| | Sbjct 48720 CCATGAAATCAAATGGATTTTT--AACCTTATAAATTTTTGGCATGTTTAGTTCAGTTAA 48777 Query 12980 AATCTG-TCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 || || ||||||||| | || ||||| |||||| | ||||| || || | Sbjct 48778 AAGGTGATCAGCAACATATTCAATGTAGGTACACATTAATCTTGAATTCATACCAATCAT 48837 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 | ||||| | ||| || |||||| | | || || || || || || | ||| ||| Sbjct 48838 ATCAACAGGAAGAGCATCAGTTAAATATTCCTTCTCAATTTCGACAGCATTTCTAATTAT 48897 Query 13099 GTCTCTTATTACGTTCTCTA-ATGGAGGATTTGATAGATGCTTAAACATCATACATGCAA 13157 || | ||| ||| | | || ||| |||| ||||||| | ||| |||| Sbjct 48898 TTCATGCAC-ACGCTCTACAGACGGTTTATTCTCAAGATAACTAAACATGAGACAAGCAA 48956 Query 13158 AATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCA 13217 |||| | || |||||||||||||| |||| || |||||| | ||| |||| Sbjct 48957 AATCTCTATGTAATCCTTCATCTCTGGAGATTAATTCATTTGAATGACACAAACCTGGCA 49016 Query 13218 TAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTT 13277 | | || |||||||| | |||||| || | |||||| ||||| || ||||||||||||| Sbjct 49017 TTAATCCACGTTTTTTTAACCAAAAGATTGAAGCAAAAGAACCAGAGAAAAATATTCCTT 49076 Query 13278 CAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACT 13337 |||| || ||||| || || | | ||| ||| | | ||| ||| | ||||| Sbjct 49077 CAACAGCGGCAAAAGCAATAATACGTTCTCCAAAAGATGCATTCTTATCGTTAATCCATC 49136 Query 13338 TTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATA-TTTTCTATTGCGTTAAATAAA 13396 || ||||| | || || | || | | |||| | | | || || || || | Sbjct 49137 TTAAAGCCCAATCAGCCTTCTTCTTGA-TAAATTCAAACTCTGTTAAAGCATTGAAAAGC 49195 Query 13397 TAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAA 13456 | |||| |||| | | |||| ||||| || || || || | |||||| || | Sbjct 49196 TTATTTCTTTCATCAGTGTCACGGATATATGTTTCAATTAACTTGGAATACATCTCACTA 49255 Query 13457 TGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACT 13516 |||||||| ||||| || ||||| || |||||||| | | || || | || || ||| Sbjct 49256 TGAATATTCTCCATAGCAATTTGAAATCCATAAAAGAAACGTGCTTCAGGGACTTGGACT 49315 Query 13517 TCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaa 13576 || |||||||||| | || ||||| || || || || || ||||||||| || Sbjct 49316 TCTTTTGAAAATCTTTCAACCAAATTTTCATTGACAATTCCATCGGAAGCAGCAAAGAAG 49375 Query 13577 GCAAG 13581 || || Sbjct 49376 GCTAG 49380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430972892797620