Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq547 176 1e-38 seq29 176 1e-38 seq39 167 5e-36 seq28 105 2e-17 >seq547 Length=3469 Score = 176 bits (194), Expect = 1e-38 Identities = 157/197 (80%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| ||||||||||| ||||| |||||||| || ||||| ||||| |||||| Sbjct 1397 GTTGATTCTTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCTTCAAGTTGCTTTCCA 1456 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||||| || ||||| || ||||| ||||| |||||||||| || Sbjct 1457 GCAAAAATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTGAATCTTTGACTTG 1516 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| |||||| ||||| || || || ||||| ||||| | || Sbjct 1517 ACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAGAGTGATTGTCTTTCCAGTTAAAGTC 1576 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 1577 TTAACAAAAATCTGCAT 1593 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || || || || || |||||||| |||||||| || ||| Sbjct 1610 AGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTTCTTCCATCT 1669 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||||||||| ||||| || || | |||||||| || || ||||||||||| || Sbjct 1670 TCAAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCT 1729 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| | ||| || || || | || || ||||| || || || ||||| || Sbjct 1730 TGAATCTTGGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATTGTT 1789 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| | || || ||||| || |||||| Sbjct 1790 TTTCCAGTTAAAGTCTTAACAAAAATTTGCATT 1822 >seq29 Length=268433 Score = 176 bits (194), Expect = 1e-38 Identities = 157/197 (80%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| ||||||||||| ||||| |||||||| || ||||| ||||| |||||| Sbjct 198346 GTTGATTCTTTTTGAATATTATAATCAGAAAGAGTTCTTCCATCTTCAAGTTGCTTTCCA 198405 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||||| || ||||| || ||||| ||||| |||||||||| || Sbjct 198406 GCAAAAATAAGACGTTGTTGGTCTGGAGGGATACCTTCCTTATCTTGAATCTTTGACTTG 198465 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| |||||| ||||| || || || ||||| ||||| | || Sbjct 198466 ACGTTGTCAATAGTATCGGAAGGTTCAACCTCAAGAGTGATTGTCTTTCCAGTTAAAGTC 198525 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 198526 TTAACAAAAATCTGCAT 198542 >seq39 Length=206625 Score = 167 bits (184), Expect = 5e-36 Identities = 533/815 (65%), Gaps = 20/815 (2%) Strand=Plus/Minus Query 268832 GAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAAC 268891 |||||| ||||||||| | | || || || ||||| | | ||||| || || || Sbjct 49404 GAAAGATACTTTATATCTCGTGTCCTAGCCTTCTTTGCTGCTTCCGATGGAATTGTCAAT 49345 Query 268892 GAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTAC 268951 |||||| | || || | || | |||| || || | |||||||| | | ||||| Sbjct 49344 GAAAATTTGGTTGAAAGATTTTCAAAAGAAGTCCAAGTCCCTGAAGCACGTTTCTTTTAT 49285 Query 268952 GGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTA--TTAATAGATA 269009 ||||| || || ||||| || ||||||||| |||||||| || | ||||| || | Sbjct 49284 GGATTTCAAATTGCTATGGAGAATATTCATAGTGAGATGTAT--TCCAAGTTAATTGAAA 49227 Query 269010 CTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATGAGAACTATGGACT 269069 | ||||| ||| | | |||| || | || || | || | | | | || | Sbjct 49226 CATATATCCGTGACACTGATGAAAGAAATAAGCTTTTCAATGCTTTAACAGAGTTTGAAT 49167 Query 269070 GTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGC---GCGCCTTACG 269126 | | | || || |||| |||||| | | |||||| ||||||| || ||| | Sbjct 49166 TTATCAAGAAGAAGGCTGATTGGGCTTTAAGATGGATTAACGATAAGAATGCATCTTTTG 49107 Query 269127 GAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCG 269186 ||||| | | |||||||||||||||| ||||| ||||| || || || |||||||| Sbjct 49106 GAGAACGTATTATTGCTTTTGCCGCTGTTGAAGGAATATTTTTCTCTGGTTCTTTTGCTT 49047 Query 269187 CTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGA 269246 | ||||||||||| || ||| | || | |||||||| || | || || ||||| | Sbjct 49046 CAATCTTTTGGTTAAAAAAACGTGGATTAATGCCAGGTTTGTGTCATTCAAATGAATTAA 48987 Query 269247 TAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTT 269306 | ||| || ||||| ||||| | || || |||||| | | || || ||||||| Sbjct 48986 TCTCCAGAGATGAAGGATTACATAGAGATTTTGCTTGTCTCATGTT---TAGTTATCTTG 48930 Query 269307 CACACAAACCTTCTCAAGATAGAGTATACGAAATTA-TAGATTCAGCTGTTTCTGTAGAA 269365 | ||||| ||| ||| | || | ||||| | |||| ||||| | || Sbjct 48929 AGAATAAACCGTCTGTAGAGCGTGTGCATGAAATAATTAGA-AATGCTGTCGAAATTGAG 48871 Query 269366 ACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATCGATG 269425 | |||| | |||| || ||||| || | ||| | || ||||||||| | || ||| Sbjct 48870 AAGGAATATTTAACTGATGCTCTTCCTGTTGATATGATTGGTATGAATTCAAGATTAATG 48811 Query 269426 ATAGAATATATTAAGTTCGTATCTGAT-AGATTGCTGGTGTCTTTAGGGTTTAGTAAAAA 269484 || ||| | | || ||||| | || || | | | | |||| Sbjct 48810 TGTACCTACATTGAATATGTTGCTGATCACCTTTTAACTGAACTAAACAT---GCCAAAA 48754 Query 269485 A--TATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCT 269542 | ||||| ||| ||||||| ||| ||| |||| || | ||| | ||||| ||| | Sbjct 48753 ATTTATAAGGTTAAAAATCCATTTGATTTCATGGTAAACCTTTCAATTGAAGGAAAGACA 48694 Query 269543 AATTTCTTCGAGAAGCGGGTAAGTAACTATCAGA-AAATGGGTGTAATGTCTACTAAAGA 269601 |||||||| || ||| || | | ||||| | | ||||| || |||| ||| |||| Sbjct 48693 AATTTCTTTGAAAAGAAAGTTTCTGAATATCAAAGATATGGG-GTTATGTGCACTGAAGA 48635 Query 269602 AGAAAATATTTTCACTACAGATGCAGAATTCTAAT 269636 |||| || ||| || ||||| || || |||| Sbjct 48634 AGAACGTACTTTTACCTTGGATGCTGATTTTTAAT 48600 >seq28 Length=270198 Score = 105 bits (116), Expect = 2e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || ||||| || || | || ||||| ||||| || ||||| ||||| || ||||| Sbjct 52629 TTACCGGCAAAGATAAGACGTTGCTGATCTGGAGGGATACCTTCCTTATCTTGGATCTTG 52688 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||||||||| || | |||||| || || || || || || ||||||||||||||| Sbjct 52689 GCTTTTACATTCTCGATGGTATCTGATGGCTCGACTTCAAGAGTGATAGTCTTACCAGTA 52748 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || || || || || || ||||| Sbjct 52749 AGAGTCTTAACGAAAATTTGCAT 52771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151371698351480