Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq1390 1344 0.0 >seq1390 Length=1008 Score = 1344 bits (1490), Expect = 0.0 Identities = 759/768 (99%), Gaps = 0/768 (0%) Strand=Plus/Minus Query 22626 GGTAATGACTCAAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTC 22685 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 892 GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTC 833 Query 22686 ATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTG 22745 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 832 ATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTG 773 Query 22746 CCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAG 22805 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 772 CCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAG 713 Query 22806 CTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTC 22865 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 712 CTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTC 653 Query 22866 AAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATCGTGCGTTCACCGAATAC 22925 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 652 AAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATAC 593 Query 22926 GTGCGCAACAACCGTCTTCCGGAGCCTGTCATACGCGTAAAACAGCCAGCGCTGGCGCGA 22985 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 592 GTGCGCAACAACCGTCTTCCGGAGACTGTCATACGCGTAAAACAGCCAGCGCTGGCGCGA 533 Query 22986 TTTAGCCCCGACGTATCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGCC 23045 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 532 TTTAGCCCCGACATAGCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGCC 473 Query 23046 CGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTG 23105 |||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| Sbjct 472 CGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAGTGACGTAAAATCGTG 413 Query 23106 TTGAGGCCAACGCCCATAATGCGGGCGGTTGCCCGGCATCCAACGCCATTCATGGCCATA 23165 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 412 TTGAGGCCAACGCCCATAATGCGGGCAGTTGCCCGGCATCCAACGCCATTCATGGCCATA 353 Query 23166 TCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCAT 23225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 352 TCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCAT 293 Query 23226 GTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGC 23285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 GTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGC 233 Query 23286 ACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCA 23345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 232 ACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCA 173 Query 23346 CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC 23393 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 172 CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC 125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303228510821010