Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq22 250 3e-61 seq5 132 6e-26 seq24 122 1e-22 >seq22 Length=331233 Score = 250 bits (276), Expect = 3e-61 Identities = 508/750 (68%), Gaps = 22/750 (3%) Strand=Plus/Plus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| |||||||| |||||| | ||||| ||||| |||||||||| || || | Sbjct 18060 ATTGGGATTTTGAAAGTATGGGAATTGGTGGTTTAGATAAAGAATTTTCTGCAATCTTTA 18119 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 || |||| || | ||||| | ||||| ||| | | || || | || |||| Sbjct 18120 GAAGAGCCTTCTTTAGTAGATTATTTCCTCCAGAACAAGTTGAACAACTTGGAATGAAAC 18179 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 || | || || ||||| ||||||| ||||| |||||||| ||||| || || Sbjct 18180 ATGTTCGTGGTATCTTATTGTATGGACCACCTGGAACAGGTAAAACTTTAATTGCCCGTC 18239 Query 164573 GCATTGCTCAAGCTTTTAAATC---GCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | | || | |||||| | || || ||||||||||||||| || || | Sbjct 18240 AAATCGGTAAAA-TGTTAAATGCTAGAGAACC--TAAAATTGTTAATGGACCACAAATTC 18296 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 | |||||||||| ||||| ||||| ||| | ||||| || ||| || || |||| Sbjct 18297 TAGACAAATATGTTGGTGAAAGTGAAGCCAATATAAGAAAATTATTTGCAGATGCAGAAG 18356 Query 164690 AAGAACAAAAGAAAGCAGGTTTAGCTAGTAAA--TTACATGTTATTGTTTTTGATGAGAT 164747 ||||| |||| | ||| | | | | | |||||| ||||| |||||||||| || Sbjct 18357 AAGAATTTAAGAGATGTGGT--AACAATTCAGCTTTACATATTATTATTTTTGATGAAAT 18414 Query 164748 AGATGCTCTTTGCAAAAAACGTGGTG-ATAATAT-----------TATTCATGATGCAGT 164795 |||||| |||| || || | || | || | | |||| ||| |||| Sbjct 18415 TGATGCTATTTGTAAGCAAAGAGGAACACAAGCTGGAAGCTCCGGTGTTCACGATACAGT 18474 Query 164796 GGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGT 164855 || ||||| | | | || || |||||||| || ||||||||||| ||| || | Sbjct 18475 AGTAAATCAAATTTTGACAAAGATGGATGGTGTTGATCAATTAAATAATATATTAGTTAT 18534 Query 164856 AGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGA 164915 |||||||| || || ||| | |||||||| ||||| ||| |||||||| || | || Sbjct 18535 CGGTATGACAAATAGAAGAGATATGATTGATGAAGCTTTGTTAAGACCTGGTAGAATGGA 18594 Query 164916 ATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCA 164975 | | |||| |||||| |||||| || || | || || | ||||||||| | | || Sbjct 18595 AGTACAAATGGAAATATCATTACCAGATGAAAATGGTCGTGTACAAATTTTACACATACA 18654 Query 164976 TGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAATAGC 165035 | || |||| | | ||| | |||| ||| ||||| |||||||| || |||| Sbjct 18655 CACAGGAAAGATGAGAGAATTTGACAAATTAAGTCCTGATGTTGATTTAAAAGAATTAGC 18714 Query 165036 TGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGAGCCGCTCAATC 165095 | | || ||||||| ||||||||| || || || ||||| ||||| |||||||| Sbjct 18715 TAAGAAGACAAAAAATTTCTCTGGTGCTGAGTTGGAAGGTTTAGTTAGAGCAGCTCAATC 18774 Query 165096 AACCGCATTAAGTCGATGTGTTAAAGTAGA 165125 || || ||| | ||| |||||||| || Sbjct 18775 AAGTGCTATAAATAGATTAGTTAAAGTTGA 18804 >seq5 Length=1449561 Score = 132 bits (146), Expect = 6e-26 Identities = 172/231 (74%), Gaps = 10/231 (4%) Strand=Plus/Plus Query 19356 TACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCAC-ATGTGGTATG 19414 |||| |||| || ||||| ||||||||| || ||||||||| || ||| |||||| Sbjct 1209458 TACCACAAATTGGAGATAAATTTGCTTCTAGACATGGTCAAAAAGGTACCATG-GGTATG 1209516 Query 19415 ATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATT 19474 || ||||| |||||||||||||| ||||| ||||| ||| || || ||| |||||||| Sbjct 1209517 ATGTATCGCCAAGAAGATATGCCATTTACAAAAGAAGGTTTATCACCAGATATTATTATT 1209576 Query 19475 AACCCACATGCTTTTCCAAGTCGAATGACGCTTAATTATATATTACAAATGTGTT-ATGG 19533 || || |||||| | ||| ||||||||| || || || | ||||| || | || Sbjct 1209577 AATCCTCATGCTGTACCATCTCGAATGACAATTGGGCATTTAAT-TGAATGTCTTCAAGG 1209635 Query 19534 ---TTTAGCGGCTTGTAAAACAGGAAAAATTTATGATGCTACTCCTTTTAA 19581 ||| | |||||||| |||| ||||| ||||||||| || ||||| Sbjct 1209636 AAAATTATCAGCTTGTAA---AGGAGAAATTGGTGATGCTACACCATTTAA 1209683 >seq24 Length=311514 Score = 122 bits (134), Expect = 1e-22 Identities = 292/432 (68%), Gaps = 10/432 (2%) Strand=Plus/Minus Query 6807 TAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATG 6866 ||||||| |||| ||||| | ||||| ||||| ||||||||||| | || || Sbjct 228981 TAATTGTGTCTTTAGAGCTTCAACATGATTGCTGTAAATGTGAGCATCTCCAATAGTGTG 228922 Query 6867 AATAAATTCACCTGGTTTCATATCAACA-GCTTGAGCAATTAAATATGTTAATAATGCAT 6925 || ||| ||||||| || || ||| ||| || || | | || || | | | | Sbjct 228921 AACAAAATCACCTGCTTCCA-ATCCACATATTTTTGCTAGCATATGAGTCAGAAGAGAGT 228863 Query 6926 AAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGAC 6985 ||||||| | ||| ||||| || || | ||| | |||| | | |||||| |||||| Sbjct 228862 AAGAAGCAATATTGAAAGGAACTCCAAGTCCTACATCTCCACTGCGTTGATACAATTGAC 228803 Query 6986 AAGATAAAATAT-TGTCTATAGCATAAAATTGACACAATACATGACATGGAGGTAAAACA 7044 || | || | | ||| | ||||||||||| ||| ||| |||||||| | ||| Sbjct 228802 -AGCTTAACTCTCCATCTTGAACATAAAATTGAACCAAAGTATGGCATGGAGGGAGAACC 228744 Query 7045 GCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTT 7104 ||| | |||||| |||||||| || | | | || | || | || ||| || Sbjct 228743 ATTAAATCAAGATCAGAAGGATTCCATGCTGATAAGATTATTCTTCGAGAATCTGG-GTT 228685 Query 7105 GTTTTTAATTTTGTTATAATTATTTG-TAATTGATCTATACCCTGACCTTCATAATTAGT 7163 |||||||||| | | | | | |||||||| | |||| ||| |||| | Sbjct 228684 ATTTTTAATTTGATCAACAACCTGAGCCAATTGATCAACTCCCTTTCCTGTGTAATCGGC 228625 Query 7164 ATGACAATT--TATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCT 7221 || ||| | | ||| |||||||||||||||||||||||||| || |||| |||||| Sbjct 228624 AT--CAACTCCTTCATATTTAGCTCCAAAATGTCTCCATTGAAATCCGTAAACTGGACCT 228567 Query 7222 AAATCACCTTCT 7233 ||||| || ||| Sbjct 228566 AAATCTCCCTCT 228555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595858518396000