Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq547 114 1e-20
seq82 82.4 7e-11
>seq547
Length=3469
Score = 114 bits (126), Expect = 1e-20
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCC 94869
||| || |||||||| | ||| || || | ||| | ||| || || ||||||||
Sbjct 1624 AGTTGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTTCC 1683
Query 94870 GCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTT 94929
| ||||||| | | ||| |||||||| || || ||||||||||| | ||| || | ||
Sbjct 1684 GGCAAAGATAAGACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATCTTGGATTT 1743
Query 94930 GACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989
|||| | ||| |||||||| | || || |||| || || ||||||||||| | |||
Sbjct 1744 GACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATTGTTTTTCCAGTTAAAGT 1803
Query 94990 TTTCACAAAGATCTGCAT 95007
|| ||||| || |||||
Sbjct 1804 CTTAACAAAAATTTGCAT 1821
Score = 93.3 bits (102), Expect = 4e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931
|||||||||||||||| || ||||| ||||| ||||| || || | || || |||||||
Sbjct 2119 CAAAGATTAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTATCCTGGATCTTAGCCTTGA 2178
Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991
|| | | |||||| | | || || |||| ||| || || || || || | ||| |
Sbjct 2179 CGTTATCAATAGTGTCTGAAGGCTCAACTTCAAGCGTTATAGTCTTCCCTGTCAAAGTCT 2238
Query 94992 TCACAAAGATCTGCATGCTTA 95012
| |||||||| |||||| |||
Sbjct 2239 TAACAAAGATTTGCATGGTTA 2259
>seq82
Length=59906
Score = 82.4 bits (90), Expect = 7e-11
Identities = 109/150 (73%), Gaps = 1/150 (1%)
Strand=Plus/Minus
Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931
||||||| | | ||| || || |||||||| ||||| || || | ||||| | |||||
Sbjct 47876 CAAAGATGAGGCGTTGTTGGTCAGGAGGAATTCCTTCCTTCTCTTGGATTTTAGACTTGA 47817
Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991
| | | ||| || | | || || |||| ||||| ||||| |||||||||||||
Sbjct 47816 CATTATCAATAGTATCGGATGGCTCAACTTCAAGAGTGATAGTTTTGCCAGTAAGAGTTT 47757
Query 94992 TCACAAAGATCTGCATGCTTAC-AACATAT 95020
| || ||||| |||||| || | || ||||
Sbjct 47756 TGACGAAGATTTGCATGATTCCTAAAATAT 47727
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448281057411600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |