Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq547 114 1e-20 seq82 82.4 7e-11 >seq547 Length=3469 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCC 94869 ||| || |||||||| | ||| || || | ||| | ||| || || |||||||| Sbjct 1624 AGTTGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTTCC 1683 Query 94870 GCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTT 94929 | ||||||| | | ||| |||||||| || || ||||||||||| | ||| || | || Sbjct 1684 GGCAAAGATAAGACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATCTTGGATTT 1743 Query 94930 GACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 |||| | ||| |||||||| | || || |||| || || ||||||||||| | ||| Sbjct 1744 GACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATTGTTTTTCCAGTTAAAGT 1803 Query 94990 TTTCACAAAGATCTGCAT 95007 || ||||| || ||||| Sbjct 1804 CTTAACAAAAATTTGCAT 1821 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||||||||||||||| || ||||| ||||| ||||| || || | || || ||||||| Sbjct 2119 CAAAGATTAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTATCCTGGATCTTAGCCTTGA 2178 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || | | |||||| | | || || |||| ||| || || || || || | ||| | Sbjct 2179 CGTTATCAATAGTGTCTGAAGGCTCAACTTCAAGCGTTATAGTCTTCCCTGTCAAAGTCT 2238 Query 94992 TCACAAAGATCTGCATGCTTA 95012 | |||||||| |||||| ||| Sbjct 2239 TAACAAAGATTTGCATGGTTA 2259 >seq82 Length=59906 Score = 82.4 bits (90), Expect = 7e-11 Identities = 109/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | | ||| || || |||||||| ||||| || || | ||||| | ||||| Sbjct 47876 CAAAGATGAGGCGTTGTTGGTCAGGAGGAATTCCTTCCTTCTCTTGGATTTTAGACTTGA 47817 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | ||| || | | || || |||| ||||| ||||| ||||||||||||| Sbjct 47816 CATTATCAATAGTATCGGATGGCTCAACTTCAAGAGTGATAGTTTTGCCAGTAAGAGTTT 47757 Query 94992 TCACAAAGATCTGCATGCTTAC-AACATAT 95020 | || ||||| |||||| || | || |||| Sbjct 47756 TGACGAAGATTTGCATGATTCCTAAAATAT 47727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448281057411600