Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq14 161 2e-35 seq30 149 1e-31 seq18 143 4e-30 seq1 127 3e-25 seq121 118 2e-22 >seq14 Length=747786 Score = 161 bits (178), Expect = 2e-35 Identities = 198/268 (74%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | |||||| |||||||| |||||||| ||||| ||||||||| Sbjct 636321 GCAAAACGCCATCGTAAAGTTCTTCGTGATAACATTCAAGGAATTACCAAACCAGCTATC 636380 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | || ||| | ||||| || |||||| |||||||| | ||||||| || | Sbjct 636381 CGTCGTTTAGCACGTAGAGGTGGTGTTAAGCGTATCTCTGGACTTATCTATGAGGAAACA 636440 Query 16553 CGTGATGTTTTGAAGATC-TTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| ||| | || ||| ||||| | | ||| || | ||||||| | |||| || Sbjct 636441 CGTACCGTTCTCAA-ATCTTTCCTTGAAAACGTAATTCGTGATGCTGTAACCTATTGTGA 636499 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| |||||| | || |||||||| | |||||| | || |||||| | ||| | ||||| Sbjct 636500 GCATGCTAAAAGAAAAACTGTCACTGCTATGGATGTTGTATATGCACTTAAAAGACAAGG 636559 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | ||||||| |||||| | ||| Sbjct 636560 AAGAACTCTTTATGGATTTGGAGGATAA 636587 >seq30 Length=265650 Score = 149 bits (164), Expect = 1e-31 Identities = 198/270 (73%), Gaps = 4/270 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | |||||| |||||||||||||||||||| || ||||||||| Sbjct 200866 GCAAAACGCCATCGTAAAGTTCTTCGTGATAACATCCAAGGAATCACAAAACCAGCTATC 200925 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||| | ||||| || || ||| | |||||||| | |||||||| | | Sbjct 200926 CGTCGTCTTGCTCGCAGAGGTGGTGTTAAACGTATTTCTGGATTAATTTATGAAGAAACT 200985 Query 16553 CGTGATGTTTTGAAGATCTTCCTCA-AGACCGTTATCCATGATGCT-TTCCACTATACCG 16610 ||| ||| | || ||||| || | | | || || | ||||||| || || ||| | Sbjct 200986 CGTACCGTTCTTAA-ATCTTTCTTAGAAAATGTCATTCGTGATGCTGTTACA-TATTGTG 201043 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | || ||||| | |||||||| || |||||||| | || ||||| | || | |||| Sbjct 201044 AACATGCTAAGAGAAAGACTGTTACAGCCATGGATGTTGTTTATGCTCTTAAGAGACAAG 201103 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | ||||||| || ||| | |||| Sbjct 201104 GAAGAACCCTTTATGGATTCGGAGGATAAT 201133 >seq18 Length=480702 Score = 143 bits (158), Expect = 4e-30 Identities = 197/270 (73%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||| | | ||||| ||||| || |||||||| || || ||||||||| Sbjct 476272 GCAAAACGCCATCGTAAAGTCCTTCGTGATAATATTCAAGGAATTACAAAACCAGCTATC 476213 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||| | ||||| ||||| ||| | |||||||| |||||||||| | | Sbjct 476212 CGTCGTCTTGCTCGTAGAGGTGGTGTCAAACGTATTTCTGGATTAATCTATGAAGAAACT 476153 Query 16553 CGTGATGTTTTGAAGATC-TTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCG 16610 ||| |||| | || ||| ||| | | | ||||| | ||||||| || || ||| | Sbjct 476152 CGTACTGTTCTTAA-ATCATTCTTAGAAAATGTTATTCGTGATGCTGTTACA-TATTGTG 476095 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | || |||||| | ||||| || || | |||||| | || || || | ||| | |||| Sbjct 476094 AACATGCTAAAAGAAAGACAGTTACTGCTATGGATGTTGTTTACGCTCTTAAAAGACAAG 476035 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | ||||||| ||||| | |||| Sbjct 476034 GAAGAACTCTTTATGGATTTGGTGGATAAT 476005 >seq1 Length=6158768 Score = 127 bits (140), Expect = 3e-25 Identities = 191/269 (71%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | || || ||||| ||||||||||||||||| ||||| || Sbjct 5563408 GCAAAGCGTCATCGTAAAGTACTCCGTGATAATATCCAAGGAATCACCAAACCAGCAATT 5563467 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || || | || || || || ||| ||||||| | |||||||||| | | Sbjct 5563468 CGTCGTCTTGCACGCAGAGGAGGTGTAAAACGTATCTCTGGCCTTATCTATGAAGAAACT 5563527 Query 16553 CGTGATGTTTTGAAGATC-TTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| |||| | || ||| || | ||| ||| || | |||||| | |||| || Sbjct 5563528 CGTACTGTTCTTAA-ATCTTTTTTGGAGAACGTAATTCGTGATGCCGTTACCTATTGTGA 5563586 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | || ||||| ||| | |||||| | ||||| || | || | ||||| Sbjct 5563587 ACACGCCAAGAGAAAAACTGTTACCGCAATGGATGTTGTCTACGCTCTCAAGAGACAAGG 5563646 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | ||||||| ||||| | |||| Sbjct 5563647 AAGAACTCTTTATGGATTTGGGGGATAAT 5563675 >seq121 Length=26088 Score = 118 bits (130), Expect = 2e-22 Identities = 171/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 16463 AACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAG 16522 ||||||||||||||||| || ||||||||||||||||| ||||| | ||||| || || Sbjct 11531 AACATCCAAGGAATCACAAAACCAGCTATCCGTCGTCTTGCTCGCAGAGGTGGTGTTAAA 11472 Query 16523 CGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACC 16582 ||| | |||||||| |||||||||| | | |||| | || |||| | | | Sbjct 11471 CGTATTTCTGGATTAATCTATGAAGAAACAAGAACTGTTCTTAAATCCTTCTTAGAAAAT 11412 Query 16583 GTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCAT 16641 || || | ||||||| || || ||| || || || || | ||||||||||| | || Sbjct 11411 GTCATTCGTGATGCTGTTACA-TATTGTGAACATGCCAAGAGAAAGACTGTCACTGCTAT 11353 Query 16642 GGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | |||||||| | || | ||||| | | ||||||| || || | |||| Sbjct 11352 GGATGTTGTCTATGCTCTTAAGAGACAAGGAAGAACCCTTTATGGATTCGGTGGATAAT 11294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073545104330