Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq17 230 4e-55 >seq17 Length=497611 Score = 230 bits (254), Expect = 4e-55 Identities = 370/528 (70%), Gaps = 4/528 (1%) Strand=Plus/Plus Query 193639 AACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGC 193698 |||| | || || ||| |||||| ||| ||| ||||||||||||| ||||| | | Sbjct 24792 AACCAACAGAAATTTATCATCTTGCTGCACAATCTCATGTTAAAGTTAGTTTTGATTTAC 24851 Query 193699 CAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTA 193758 |||| || ||| || | ||||||||| | ||||| | ||| ||||||| ||| || || Sbjct 24852 CAGAATACACTGCTGAAGTTGATGCTGTTGGAACATTAAGATTACTTGATGCAATT-GT- 24909 Query 193759 TGTTGGGAATGGAGAAAG--ATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGG 193816 || | ||| | || | ||| | ||||| ||||| || ||||| ||||| Sbjct 24910 TGCCTGTAATTTACAACATAAAGTTAAATTTTATCAAGCATCAACATCTGAACTTTATGG 24969 Query 193817 TGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGG 193876 |||| || | ||||| | ||| || || ||||| ||||| | ||| || | Sbjct 24970 AAAAGTTCAAGAAATTCCACAAAAAGAGACAACTCCATTCTATCCAAGAAGTCCATACGC 25029 Query 193877 TGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCA 193936 ||| || || ||||||| | |||||| || || ||||||||||| | ||||| || Sbjct 25030 TGTCGCTAAATTGTATGCATTTTGGATAATAAAAAATTATCGTGAAGCTTATGGTATCTT 25089 Query 193937 CGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAAC 193996 | | || ||| ||| | || |||||||| ||||||||||||||| | | ||||| || Sbjct 25090 TGGTTGTAATGGAATTTTGTTTAATCACGAGTCTCCAAGAAGAGGTAATAATTTTGTTAC 25149 Query 193997 TCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCT 194056 | ||||| || || | || |||| || | |||| |||| ||| | | | | Sbjct 25150 AAGAAAGATAACTAGAGCTGTAGCTAAAATAAGTATTGGTGTACAAGAGAGTATATCATT 25209 Query 194057 TGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTG 194116 ||||||||| ||||||| | ||||||||||| ||| || ||||||||||| ||||| Sbjct 25210 AGGTAATCTTGATGCTAAACGTGATTGGGGACATGCACGTGAATATGTTGAAGCTATGTG 25269 Query 194117 GTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGG 194164 | ||| | ||||| |||| || ||||||| ||| || || ||||| Sbjct 25270 GAGAATCCTCCAACATGATGTTCCTGATGATTTTGTTATAGCAACAGG 25317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807536929063600