Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq39 221 1e-52 >seq39 Length=206625 Score = 221 bits (244), Expect = 1e-52 Identities = 567/851 (67%), Gaps = 20/851 (2%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT- 21185 ||||||||||||||| || | ||| | ||||||| | |||||| ||||| | Sbjct 48601 TTAAAAATCAGCATCCAAGGTAAAAGTACGTTCTTCTTCAGTGCACATAAC-CCCATATC 48659 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||||| ||| |||| | ||||| || ||||||||||||||||| | ||| | | Sbjct 48660 TTTGATATTCAGAAACTTTCTTTTCAAAGAAATTTGTCTTTCCTTCAATTGAAAGGTTTA 48719 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCC-AGTTCTGATAAT 21304 |||| |||||||||||||||| | ||| | ||||| | || ||||| | ||| Sbjct 48720 CCATGAAATCAAATGGATTTTTAACCTTATAAATTTT-TGGCATGTTTAGTTCAGTTAAA 48778 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 | ||| || ||| |||| || || |||||||||| |||||||||| |||| Sbjct 48779 AGGTGATCAGCAACATATTCAATGTAGGTACACATTAATCTTGAATTCATACCAATCATA 48838 Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATA 21424 | ||||||||||| | || ||| | || || || ||| || | |||||| Sbjct 48839 TCAACAGGAAGAGCATCAGTTAAATATTCCTTCTCAATTTCGACAGCATTTCTAATTAT- 48897 Query 21425 TTTATTATCCTAGATGTACTAGGGGG---ATACAATAATTGTTTAAACATCAAACATGCA 21481 || | | | | ||| || || || | | | ||||||| | ||| ||| Sbjct 48898 -TTCATGCACACGCTCTAC-AGACGGTTTATTCTCAAGATAACTAAACATGAGACAAGCA 48955 Query 21482 AAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGC 21541 ||||| | ||| || |||||||| || ||||||||||| ||| ||||| ||| Sbjct 48956 AAATCTCTATGTAATCCTTCATCTCTGGAGATTAATTCATTTGAATGACACAAACCTGGC 49015 Query 21542 ATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCC 21601 |||||||| | |||||||||||||| ||||| ||||| | || || || || || || Sbjct 49016 ATTAATCCACGTTTTTTTAACCAAAAGATTGAAGCAAAAGAACCAGAGAAAAATATTCCT 49075 Query 21602 TCAACGGCAGCAAATGCAACTAAT-CGTTCACCGTATG-TAGATTCTTTATCCAATATCC 21659 ||||| || ||||| |||| |||| ||||| || | | | |||| ||||| |||| Sbjct 49076 TCAACAGCGGCAAAAGCAA-TAATACGTTCTCCAAAAGATGCATTC-TTATCGTTAATCC 49133 Query 21660 ATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATC-AATTGTATCAATAGCTTTTAAA 21718 || || ||||| | ||||| | || ||| | || || | | | || ||| || ||| Sbjct 49134 ATCTTAAAGCCCAATCAGCCTTCTTCTTGATAAATTCAAACTCTGTTAA-AGCATTGAAA 49192 Query 21719 AGATGAtttttttCATC--TACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTT 21776 || | |||| ||||||| | ||| ||| | |||||| | Sbjct 49193 AGCTTATTTCTTTCATCAGTGTCACGGATATATGTTTCAATTAACTTGGA--ATACATCT 49250 Query 21777 CAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATT 21836 || ||| ||||| || || || || |||||||| ||||| | | ||| || | || Sbjct 49251 CACTATGAATATTCTCCATAGCAATTTGAAATCCATAAAAGAAACGTGCTTCAGGGACTT 49310 Query 21837 GAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAA 21896 | || || |||||| || | |||| |||||||| || |||||||| || |||| Sbjct 49311 GGACTTCTTTTGAAAATCTTTCAACCAAATTTTCATTGACAATTCCATCGGAAGCAGCAA 49370 Query 21897 AAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTA 21956 | || || | | | |||||| |||| ||| || || || | | || ||| ||| Sbjct 49371 AGAAGGCTAGGACACGAGATATAAAGTATCTTTCATTGTCAGTCATTGATTCCCAGTCTC 49430 Query 21957 ATAAATCTTTT 21967 | ||||||| Sbjct 49431 TCATATCTTTT 49441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531888765744400