Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq39 205 2e-47 seq5 196 1e-44 seq15 140 8e-28 seq50 109 1e-18 seq11 91.5 4e-13 >seq39 Length=206625 Score = 205 bits (226), Expect = 2e-47 Identities = 379/545 (70%), Gaps = 16/545 (3%) Strand=Plus/Minus Query 22424 TTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAAT--GAACGT-T 22480 || ||| || ||||| ||||| |||||||| | | |||||| ||| || ||| | | Sbjct 49172 TTGAATTTATCAAGAAGAAGGCTGATTGGGCTTTAAGATGGATTAACGATAAGAATGCAT 49113 Query 22481 CATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCAT 22540 | || | |||||| ||||||| ||||| | |||||||| || || || ||||| | | Sbjct 49112 CTTTTGGAGAACGTATTATTGCTTTTGCCGCTGTTGAAGGAATATTTTTCTCTGGTTCTT 49053 Query 22541 TTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATG 22600 || | ||||||||||| |||||||||||| | | ||||| ||| | |||||||| Sbjct 49052 TTGCTTCAATCTTTTGGTTAAAAAAACGTGGATTAATGCCAGGTTTGTGTCATTCAAATG 48993 Query 22601 AGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATC 22660 | ||||| | ||||||| || | |||| |||||||| ||| | | | | | ||| Sbjct 48992 AATTAATCTCCAGAGATGAAGGATTACATAGAGATTTTGCTTGTCTCATGTTTAGTTATC 48933 Query 22661 ATATCATTCATAAA-CTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAA 22719 | | ||||| | || || || ||| | ||| || |||| |||||| || ||| Sbjct 48932 TTGAGA---ATAAACCGTCTGTA-GAGCGTGTGCATGAAATAATTAGAAATGCTGTCGAA 48877 Query 22720 CTT--GAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCG 22777 || ||| | |||||| | || || | || || | | |||||||| ||| | Sbjct 48876 ATTGAGAAGGAATATTTAACT--GATGCTCTTCCTGTTGATATGATTGGTATGAATTCAA 48819 Query 22778 AATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATG 22837 || |||| |||| || ||| ||| |||||| |||| || |||| | ||| ||| Sbjct 48818 GATTAATGTGTACCTACATTGAATATGTTGCTGATCACCTTTTAACTGAACT-AAACATG 48760 Query 22838 -CAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGA 22896 |||| |||||| || ||||||||||| | |||| | ||||| |||||||| Sbjct 48759 CCAAAAATTTATAAGGTTAAAAATCCATTTGATTTCATGGTAAACCTTTCAATTGAAGGA 48700 Query 22897 AAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGATGCA 22956 ||||| |||||||| ||||| | |||| |||||| |||| | || |||||| |||| Sbjct 48699 AAGACAAATTTCTTTGAAAAGAAAGTTTCTGAATATCAAAGATATGGGGTTATG--TGCA 48642 Query 22957 TTGAA 22961 |||| Sbjct 48641 CTGAA 48637 >seq5 Length=1449561 Score = 196 bits (216), Expect = 1e-44 Identities = 437/649 (67%), Gaps = 18/649 (3%) Strand=Plus/Plus Query 363441 TATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGA 363500 |||||||||| | || || ||| | || |||||||||||| ||||||| ||| | || Sbjct 1211992 TATTGTTGAAAGACCACAACATCTTTTTATGCGTGTTGCTGTTGGTATTCATGGAGAAGA 1212051 Query 363501 TGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGT-----GTATTCACGCAC 363555 | |||| | | ||||||||||||| | || || ||| || || || | Sbjct 1212052 TATTGAATCTGTACTTGAAACATATAAC--TGTATGT-CTCAAAAATGGTTTTTAC--AT 1212106 Query 363556 GCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTT 363615 || | |||||| | || ||||| ||||| | || ||| |||| || || ||| | Sbjct 1212107 GCATCACCAACATTATATAATGCAGGAACACCAAAAGGACAATTGTCATCATGTTTTTTA 1212166 Query 363616 CTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTT 363675 ||| |||| ||| ||||| || || ||||| | ||| || ||||| ||||||||| | Sbjct 1212167 TTAACAATGGTGGATGATTCAATAGAAGGTATTTATGATACTCTTAAAAATTGTGCTATA 1212226 Query 363676 ATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAG 363734 ||||| || |||||| ||| ||||| || | | ||| ||||||| |||| | Sbjct 1212227 ATTTCAAAAGGTGCAGGTGGAGTTGGTCTAAGTGTTAATAATATTCGTGCCACAGGATCT 1212286 Query 363735 TTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGA 363794 || ||| | || ||| ||| || ||||| | ||||| ||| | || || ||| | Sbjct 1212287 TTT-ATTAGTGGAACAAATGGAATTTCAAATGGATTAGTTCCTATGTTACGAGTATTTAA 1212345 Query 363795 CAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTA 363854 ||||||| | || || || || |||||| || | ||| || |||||||| || Sbjct 1212346 TGATACTGCTCGTTATGTTGATCAAGGTGGAAATAAAAGACCAGGAGCATTTGCTATTTA 1212405 Query 363855 TCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAA- 363913 | | || || ||||| ||||||||| | ||| | | || |||||| || || Sbjct 1212406 TATTGAACCATGGCATGCAGATATTTTTCAATTTTTAAATCTTAAGAAAAATACAGGTCC 1212465 Query 363914 --AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTAT 363971 |||||||| ||||| |||||| | || |||| | |||||| |||| ||||| Sbjct 1212466 GGAAGAGGAA---CGTGCTCGTGATTTATTTTATGGTTTATGGGTTCCTGATTTATTTAT 1212522 Query 363972 GAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCT 364031 ||| || || || | | |||||||| | | || || ||||||||||||||||| Sbjct 1212523 GAAACGTGTTGAAAGGGATTCTTATTGGTCATTGATGTGTCCTCACGAATGTCCAGGTCT 1212582 Query 364032 TTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAA 364080 | || ||||| || || | || || |||| | || |||||| Sbjct 1212583 TGATAATAGTTGGGGAGAAGAATTTGAAACTTTATATGTTAAATATGAA 1212631 >seq15 Length=622252 Score = 140 bits (154), Expect = 8e-28 Identities = 394/596 (66%), Gaps = 18/596 (3%) Strand=Plus/Plus Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 |||| |||| | || || ||| | | ||| | |||||| ||||||| ||| | ||| Sbjct 203125 ATTGCTGAAAGACCACAACATTTACTTATGAGAGTTGCTGTTGGTATTCATGGAGAAGAT 203184 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCG---TGTATTCACGCACGCC 363558 ||||| | | || |||||||| || || || || | || || || || || Sbjct 203185 ATTGATTCAGTTATCGAAACATACAA--TTTTATGTCACAGAAATGGTTT-ACACATGCT 203241 Query 363559 ACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTA 363618 | |||||| | | ||||| ||||| | |||||| ||||||| || |||||| | Sbjct 203242 TCTCCAACACTATTTAATGCAGGAACAACTCGTCCACAATTGTCTTCATG-TTTCTTATT 203300 Query 363619 AA-AATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTAT 363677 || |||| | ||||| || || || || | ||| ||| | || | |||||| | || Sbjct 203301 AACAATGGCTGGAGATTCTATTGAAGGGATTTATGATACATTGAAACAATGTGCTTTAAT 203360 Query 363678 TTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACA--GAACAGT 363735 ||| || ||| || || ||||| || | || | ||||||| | || || | Sbjct 203361 TTCAAAATCTGCTGGAGGTATTGGATTAAATGTTCATTGTATTCGTGCCAATGGATCATT 203420 Query 363736 TACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGAC 363795 || || | || || ||| || ||||| |||| || ||| | | || || || Sbjct 203421 TA--TTGGTGGAACTAATGGAACATCAAATGGATTGGTACCAATGTTGAGAGTTTTCAAC 203478 Query 363796 AATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTAT 363855 |||||||| || || || || || |||||| ||| | || || ||||| || ||| Sbjct 203479 AATACTGCAAGATATGTTGATCAAGGTGGAAATAAGAGACCTGGAGCTTTTGCAATTTAT 203538 Query 363856 CTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAA-- 363913 | || || ||||| |||||| | || ||| | || || |||||| || ||| Sbjct 203539 TTGGAACCATGGCATGCAGATATTATGGAATTTTTGGATCTTAAGAAAAATACAGGACCA 203598 Query 363914 -AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATG 363972 |||||||| ||||| |||||| | ||||||| | |||||| |||| |||||| Sbjct 203599 GAAGAGGAA---CGTGCTCGTGATTTATTCTATGGTTTATGGGTTCCTGATTTGTTTATG 203655 Query 363973 AAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGG 364028 || || || || || | |||||||| | | || || || ||||||||||| Sbjct 203656 AAACGTGTTGAAAAAGATTCATATTGGTCATTGATGTGTCCTCATGAATGTCCAGG 203711 >seq50 Length=153230 Score = 109 bits (120), Expect = 1e-18 Identities = 174/250 (70%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 145533 AAATCTTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGTCT 145592 |||||||| ||| |||||||| || ||||| |||| |||| || |||| || Sbjct 97762 AAATCTTCGTCTTTTAATCCAGTACCAATCTTACATATTGTTTGAAATTCTTCCATATCA 97703 Query 145593 GGATCATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACCGGTA 145652 |||||| || | | ||| ||||| |||| || || | |||||| ||| | Sbjct 97702 TAATCATAACAGGCTAATAAATATCCACCAAATACTCCTGTTCTCTTTCCGGCACCATAA 97643 Query 145653 TACCCCGCAATTGGTACAAGATCACAACTATCACCCATTCCGGCAAGATAATCCTTTTTA 145712 || || ||| | |||||||| || ||||||| | ||| ||||||||||||| || Sbjct 97642 TAACCACCAAGTACAACAAGATCTAAAGTATCACCAACACCGTCAAGATAATCCTTCTTG 97583 Query 145713 AGTTTTAGCCAATTGAGAGAACGTTTCGATGGTTCATAGCTAGAGTTATCGTCCAATGAT 145772 ||||||| ||| ||| |||| | || | ||||||| ||| || || ||||| | | Sbjct 97582 AGTTTTAACCAGTTGTGAGATCTCTTAGCAATTTCATAGGTAGCATTTTCATCCAAAGTT 97523 Query 145773 TTTACCATTA 145782 || ||||||| Sbjct 97522 TTAACCATTA 97513 >seq11 Length=1024817 Score = 91.5 bits (100), Expect = 4e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 27235 TACGAAGGCGCAATTGTTATTGATGCAAAATCGGGGTTTTATACGGATCCAGTCGCCACA 27294 || || || || | ||||||||| ||| | || ||||||| || ||| | || ||| Sbjct 441788 TATGAGGGAGCTACTGTTATTGAACCAATAAGAGGTTTTTATAATGAACCAATTGCTACA 441847 Query 27295 CTTGACTTTGCATCACTATATCCATCAATTATGCTTGCTCACAATTTATGTTA 27347 ||||| ||||| ||||||||||||||||||||| |||| || ||| | ||||| Sbjct 441848 CTTGATTTTGCTTCACTATATCCATCAATTATGATTGCACATAATCTTTGTTA 441900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303323374415420