Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq547 109 5e-19 seq29 93.3 4e-14 seq15 91.5 1e-13 >seq547 Length=3469 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || |||||||||||| | ||||| | ||||| || ||| Sbjct 1822 AATGCAAATTTTTGTTAAGACTTTAACTGGAAAAACAATTACTCTTGAAGTTGAA-CCAT 1764 Query 24050 C-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 | ||||| ||||| | |||||| |||||| ||||||||||| || || || |||| Sbjct 1763 CTGACACTATCGACAACGTCAAATCCAAGATTCAAGACAAAGAAGGAATCCCACCAGATC 1704 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 |||| | || || | | ||| || ||||| ||||||| |||| || || || | Sbjct 1703 AACAACGTCTTATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACA 1644 Query 24169 ACATTCAAAAAGAATCTAC 24187 |||| ||||| || || || Sbjct 1643 ACATCCAAAAGGAGTCAAC 1625 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || ||||||||||| | || || | || || || | | Sbjct 1593 ATGCAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCC 1534 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | ||||| ||||||| || || ||||| || ||||| || ||| Sbjct 1533 GATACTATTGACAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAA 1474 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || |||| | || |||||||| ||||||| |||| | |||||||| Sbjct 1473 CAACGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAAT 1414 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||||||||| || |||| || || Sbjct 1413 ATTCAAAAAGAATCAACCCTTCACTTGGT 1385 >seq29 Length=268433 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || ||||||||||| | || || | || || || | | Sbjct 198542 ATGCAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCC 198483 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | ||||| ||||||| || || ||||| || ||||| || ||| Sbjct 198482 GATACTATTGACAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAA 198423 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || |||| | || |||||||| ||||||| |||| | |||||||| Sbjct 198422 CAACGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAAT 198363 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||||||||| || |||| || || Sbjct 198362 ATTCAAAAAGAATCAACCCTTCACTTGGT 198334 >seq15 Length=622252 Score = 91.5 bits (100), Expect = 1e-13 Identities = 300/452 (66%), Gaps = 31/452 (7%) Strand=Plus/Minus Query 132862 TCCCAAGtttttttGATTGTTTTTCTCGTTTACGTT-ATCTTTATGCAACATGTACGGAC 132920 ||||||||||| |||||| |||| || |||| | ||| || | | ||| || ||| Sbjct 203901 TCCCAAGTTTTGTTGATTACTTTT-TCTATTACAATGATCCTTGTAAACCATATATGGAG 203843 Query 132921 CTCCGGTTTCGACCTGAATTTCGATAATTTTTCTGTGAAGATCTAAC----GCCAAAATT 132976 ||| ||||| | ||| |||| ||| ||| || || |||| ||| ||| Sbjct 203842 TTCCAGTTTCTATTTGACTTTCACAAATCTTT-TGCCAAA---TAACCCTAGCCTTGATT 203787 Query 132977 TGTT--CTTTAAA-CTTGCCCTGAGTCTCGTAACTTTCGTATAATCGCTCAAATTCTTCG 133033 |||| || ||| ||| || |||||| || || ||| ||| |||||||| || Sbjct 203786 TGTTTTCTGTAACGCTT---CTCAGTCTCATACTTTGTGTACAATTTTTCAAATTCATCC 203730 Query 133034 CCATAGCAGTCGTTCAAACCGGGACACTCGTCAGGACACATCAATGACCATTTT---TCT 133090 || | || || | || || ||||| || | |||||||||||||||||| | | ||| Sbjct 203729 CCCCAACAATCTTCTAATCCTGGACATTCATGAGGACACATCAATGACCAATATGAATCT 203670 Query 133091 CCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTCCACATGGCAAAAAATAAATCGCGA 133150 | | || | |||||| ||||| ||| ||| | || | |||||||| ||| Sbjct 203669 TTTTC---AACACGTTTCATAAACAAATCAGGAACCCATAAACCATAGAATAAATCACGA 203613 Query 133151 G--CCTTCATATCTTCCGCGCCCATATTTCGTTTCAAGTCCaaaaaagtaaaaaTGTCTG 133208 | | ||| ||||| | || ||||| || | |||||||| | ||| |||| Sbjct 203612 GCACGTTC--CTCTTCTGGTCCTGTATTTTTCTTAAGATCCAAAAATTCCATAATATCTG 203555 Query 133209 CATGCCAAGGCTCGATATATACGGCCAAAGCGCC---TTTCCTTTTACCTCCCTGATCCA 133265 ||||||| || || | ||| | || ||||| || | || | || || || ||||| | Sbjct 203554 CATGCCATGGTTCCAAATAAATTGCAAAAGCTCCAGGTCTCTTATTTCCACCTTGATCAA 203495 Query 133266 CATGTCTAAGCA-TGCTGTTGAAGACACGCAA 133296 ||| ||| ||| | ||||||| || | ||| Sbjct 203494 CATATCT-TGCAGTATTGTTGAAAACTCTCAA 203464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429926515880550