Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq539 140 9e-29 >seq539 Length=3522 Score = 140 bits (154), Expect = 9e-29 Identities = 215/302 (71%), Gaps = 6/302 (2%) Strand=Plus/Minus Query 39263 CCGCCGCCGACGCGCTTCGTCGTGTAGAACAGTACGTACGGCTTCGCCGTGTACGGATCG 39322 || || || || ||||| || ||||||||||| || || ||||| || | || |||||| Sbjct 3415 CCACCACCCACACGCTTGGTGGTGTAGAACAGCACATATGGCTTGGCGGAATATGGATCG 3356 Query 39323 CGCAGCACGCGAACCCCGATGCGGTCGATGATCAGATACGTCTGCTGGAAGTCGCCGAAG 39382 |||||||| || ||||| ||| || | ||||||||| || ||| ||||| || Sbjct 3355 CGCAGCACCCGCACCCCCGCGCGATCCACGATCAGATAGCCGCGCGAGAAATCGCCAAAC 3296 Query 39383 AGAATCGGCGTCGAGTTCGCCGCCACATCCGGCATGTCCGGCACCTCGGTAACCGGATAG 39442 || || | ||| |||||||||||||||||| | | |||||| ||||||||| Sbjct 3295 GCAACCGACAGACTGTTGGCCGCCACATCCGGCATGGTCTCGATCTCGGTGACCGGATAG 3236 Query 39443 CCCGCCAGCGTCGCCGGCT-GCCCCGCTACGTACGACGGTTGCCAGAGATAGTTCCCTTG 39501 ||| ||| |||||| || |||| || ||| || ||| ||||| |||||| || | Sbjct 3235 CCCAGCAGGCTCGCCGTCTCGCCCGGCCGCGT-CGCCGGCGACCAGATATAGTTGCCGTC 3177 Query 39502 GCCGTCCTTCAGCTTCCGCAC--CTGACGCTGCGTGTTGCGGTTCATCGCGAAGCGGGCG 39559 | ||||| | ||| ||||| | || | |||| ||||||||| | ||||| || Sbjct 3176 CGCATCCTTGAACTTGCGCACGGCCGAAAC--CGTGCGTCGGTTCATCACAAAGCGCCCG 3119 Query 39560 TT 39561 || Sbjct 3118 TT 3117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143414517417960