Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_007805.1 Length=39199 Score E Sequences producing significant alignments: (Bits) Value seq607 87.8 4e-13 >seq607 Length=3148 Score = 87.8 bits (96), Expect = 4e-13 Identities = 185/270 (69%), Gaps = 7/270 (3%) Strand=Plus/Plus Query 30946 AACATCAAGCCCGGGATCATGGCGAACGAGGAGTTGGCAGAGCTCAGCCACTCGCATCGC 31005 ||||||||||| ||| || | |||||||| | |||||||||| | | | |||| Sbjct 125 AACATCAAGCCAGGGTTCTTCTCGAACGAGCACCTGGCAGAGCTGGACTTCGCCACTCGC 184 Query 31006 CTCCTGTTCATCTATTTGTGGATGTTGGCCGACAGGGAAGGGCGCCTGGAGGATCGACCG 31065 || ||||||||| | |||||| ||| ||| ||||||||||||| |||||||| ||| Sbjct 185 CTGCTGTTCATCGGTATGTGGACTGAGGCTGACCGGGAAGGGCGCCTTGAGGATCGTCCG 244 Query 31066 AAGCGCATCAAAGCAGAAGCCT-TTCCCTACGATGATGGGCTCGATGTGGAAAGCATGCT 31124 ||| | ||| | ||| ||||| | ||| |||| | | ||||||| Sbjct 245 CGCCGCCTGAAA--ATGGCCCTGTTCCC--GGCTGACAACGTCGACATCAATCGCATGCT 300 Query 31125 GGATGATTTGGTTTCGGCTGGGTTTATCCAGCGGTATGAGCG-GTGCGGAGTCAGGGCAG 31183 |||||| ||| | ||||| ||| |||| || | || | ||| || | || Sbjct 301 GGATGACCTGGATCATTTGGGGTTCATCAAGCGCTA-CACCGTGGGCGACGTTAAAGCGA 359 Query 31184 TTCAGGTGCTGAACTTCGCCAAGCACCAGA 31213 | |||||| | |||| ||||||||||||| Sbjct 360 TCCAGGTGATCAACTGGGCCAAGCACCAGA 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125312506506420