Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq547 102 5e-17 seq40 95.1 8e-15 seq29 93.3 3e-14 seq196 86.0 4e-12 seq194 86.0 4e-12 >seq547 Length=3469 Score = 102 bits (112), Expect = 5e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||| ||||| ||||||||| || ||||| ||||| | | | | | || || | ||| Sbjct 1618 ATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTTCTTCCATCTTCAAGTTG 1677 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 |||||||||||| || || ||||||||||| | |||| ||||||||||| ||| || Sbjct 1678 TTTTCCGGCAAAGATAAGACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATCTT 1737 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 || || || | || ||| || ||||||||| | ||||| ||||| || || Sbjct 1738 GGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACTTCAAGAGTAATTGTTTTTCCAGT 1797 Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || ||||| Sbjct 1798 TAAAGTCTTAACAAAAATTTGCAT 1821 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38087 ATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATC 38146 ||| ||||| | | ||| | ||||| ||||| || || ||||||||||| ||||| Sbjct 1363 ATTTCCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATC 1422 Query 38147 AGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206 ||| | | | | | || || | ||| ||||| ||||| || || |||||||| || | Sbjct 1423 AGAAAGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGG 1482 Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266 |||| ||||| || || ||| ||| ||| || || | | |||||| | ||| Sbjct 1483 AGGGATACCTTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTC 1542 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || | || || || || || || || || || || || |||||||| Sbjct 1543 AACCTCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 1593 >seq40 Length=203417 Score = 95.1 bits (104), Expect = 8e-15 Identities = 210/313 (67%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGC--G 6231 || || || |||||||| | || | | ||| || |||||||||| | | || | | Sbjct 27409 AATGTTAACCGTAATGTCGTTGATCCATACTATCGTTACAAAATGC--CAAAACTTCAAG 27352 Query 6232 CCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCG 6291 |||| || ||||| || || || |||||||| || || |||| |||||| ||| | | Sbjct 27351 CCAAAGTTGAGGGAAAAGGTAATGGTATTAAGACAGTAATTGCTAACATGGTTGAGATTG 27292 Query 6292 CTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCG 6351 |||| || | | | | || | | || || || |||||||| || || ||| | || | Sbjct 27291 CTAAAGCTTTGGAAAGACCACCAATGTATCCAACCAAATATTTTGGATGTGAATTAGGAG 27232 Query 6352 CTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTG 6411 | || || | |||||| |||||| || |||| ||| ||||| ||| || | || Sbjct 27231 CACAAACTAATTTTGATACCAAAAATGATCGCTACATTGTTAATGGAGATCACGATGCTA 27172 Query 6412 CCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCG 6471 |||| | || | | | || || ||||| | || ||||| || ||| | || | Sbjct 27171 CCAAATTACAAAATCTTTTGGATGGATTTATCAGAAAATTTGTTCTCTGTGCTAACTGTG 27112 Query 6472 ATAACCCGGAGAC 6484 | || |||||||| Sbjct 27111 ACAATCCGGAGAC 27099 >seq29 Length=268433 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38087 ATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATC 38146 ||| ||||| | | ||| | ||||| ||||| || || ||||||||||| ||||| Sbjct 198312 ATTTCCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAATC 198371 Query 38147 AGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206 ||| | | | | | || || | ||| ||||| ||||| || || |||||||| || | Sbjct 198372 AGAAAGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTGG 198431 Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266 |||| ||||| || || ||| ||| ||| || || | | |||||| | ||| Sbjct 198432 AGGGATACCTTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTTC 198491 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || | || || || || || || || || || || || |||||||| Sbjct 198492 AACCTCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 198542 >seq196 Length=13323 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||| ||||||| || |||||||||| | |||||||| Sbjct 12595 AAGCCCGTTCCCTTGGCTGTGATTTCGCTGAATGGTAGATAGGGACAGTAGGAATCTCGT 12654 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||| |||||||| ||||| ||||| Sbjct 12655 TAATCCATTCGTGCGCGTCGGAAATTACCCGACGA 12689 >seq194 Length=13415 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||| ||||||| || |||||||||| | |||||||| Sbjct 1148 AAGCCCGTTCCCTTGGCTGTGATTTCGCTGAATGGTAGATAGGGACAGTAGGAATCTCGT 1207 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||| |||||||| ||||| ||||| Sbjct 1208 TAATCCATTCGTGCGCGTCGGAAATTACCCGACGA 1242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334939811274110