Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq547 120 3e-22 seq29 107 2e-18 >seq547 Length=3469 Score = 120 bits (132), Expect = 3e-22 Identities = 158/217 (73%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| |||||||| || || ||| | || || | ||||| || | || Sbjct 1822 AATGCAAATTTTTGTTAAGACTTTAACTGGAAAAACAATTACTCTTGAAGTTGAACCATC 1763 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||||||||| |||| || | || | ||| ||||||||||| || ||||| | Sbjct 1762 TGACACTATCGACAACGTCA---AATCCAAGATTCAA-GACAAAGAAGGAATCCCACCAG 1707 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | ||||| || |||| |||||||| |||||| | ||||||| | ||| | || | Sbjct 1706 ATCAACAACGTCTTATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACT 1647 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || ||||| || || || || ||| | || || Sbjct 1646 ACAACATCCAAAAGGAGTCAACTCTCCATCTCGTTCT 1610 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||||| || || || | ||||| | || || || | || Sbjct 1593 ATGCAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCC 1534 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || | ||| |||| | ||| || || ||||| || || || ||||| Sbjct 1533 GATACTATTGACAACGTCAAGTCAAAGATTCAA-GATAAGGAAGGTATCCCTCCAGACCA 1475 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||||||||| || || ||| | ||||||| | ||| | ||||| || Sbjct 1474 ACAACGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAA 1415 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATT 25230 ||||||||||||||| || || || || || || | || | || ||||||| Sbjct 1414 TATTCAAAAAGAATCAACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGAAATT 1362 >seq29 Length=268433 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||||| || || || | ||||| | || || || | || Sbjct 198542 ATGCAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCC 198483 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || | ||| |||| | ||| || || ||||| || || || ||||| Sbjct 198482 GATACTATTGACAACGTCAAGTCAAAGATTCAA-GATAAGGAAGGTATCCCTCCAGACCA 198424 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||||||||| || || ||| | ||||||| | ||| | ||||| || Sbjct 198423 ACAACGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAA 198364 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATT 25230 ||||||||||||||| || || || || || || | || | || ||||||| Sbjct 198363 TATTCAAAAAGAATCAACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGAAATT 198311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433318441055150