Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq547 120 3e-22
seq29 107 2e-18
>seq547
Length=3469
Score = 120 bits (132), Expect = 3e-22
Identities = 158/217 (73%), Gaps = 8/217 (4%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| ||||| |||||||| || || ||| | || || | ||||| || | ||
Sbjct 1822 AATGCAAATTTTTGTTAAGACTTTAACTGGAAAAACAATTACTCTTGAAGTTGAACCATC 1763
Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
|||||||||||| |||| || | || | ||| ||||||||||| || ||||| |
Sbjct 1762 TGACACTATCGACAACGTCA---AATCCAAGATTCAA-GACAAAGAAGGAATCCCACCAG 1707
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173
| ||||| || |||| |||||||| |||||| | ||||||| | ||| | || |
Sbjct 1706 ATCAACAACGTCTTATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACT 1647
Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||| || ||||| || || || || ||| | || ||
Sbjct 1646 ACAACATCCAAAAGGAGTCAACTCTCCATCTCGTTCT 1610
Score = 107 bits (118), Expect = 2e-18
Identities = 165/233 (71%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||||| || || || | ||||| | || || || | ||
Sbjct 1593 ATGCAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCC 1534
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| ||||| || | ||| |||| | ||| || || ||||| || || || |||||
Sbjct 1533 GATACTATTGACAACGTCAAGTCAAAGATTCAA-GATAAGGAAGGTATCCCTCCAGACCA 1475
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || |||||||||| || || ||| | ||||||| | ||| | ||||| ||
Sbjct 1474 ACAACGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAA 1415
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATT 25230
||||||||||||||| || || || || || || | || | || |||||||
Sbjct 1414 TATTCAAAAAGAATCAACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGAAATT 1362
>seq29
Length=268433
Score = 107 bits (118), Expect = 2e-18
Identities = 165/233 (71%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||||| || || || | ||||| | || || || | ||
Sbjct 198542 ATGCAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCC 198483
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| ||||| || | ||| |||| | ||| || || ||||| || || || |||||
Sbjct 198482 GATACTATTGACAACGTCAAGTCAAAGATTCAA-GATAAGGAAGGTATCCCTCCAGACCA 198424
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || |||||||||| || || ||| | ||||||| | ||| | ||||| ||
Sbjct 198423 ACAACGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAA 198364
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATT 25230
||||||||||||||| || || || || || || | || | || |||||||
Sbjct 198363 TATTCAAAAAGAATCAACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGAAATT 198311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433318441055150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |