Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq39 280 2e-70 >seq39 Length=206625 Score = 280 bits (310), Expect = 2e-70 Identities = 518/748 (69%), Gaps = 34/748 (5%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 |||||| ||| || |||| ||||| |||||| |||||||||||||||||||||||||| Sbjct 48646 CATAACCCCATATCTTTGATATTCAGAAACTTTCTTTTCAAAGAAATTTGTCTTTCCTTC 48705 Query 92850 CAAAGA------TATC--GAATTCACTAGTGATTGGATTCTTGGCGTTATAATACTTTTC 92901 | || || | ||| ||| | |||||| || | |||||| | |||| Sbjct 48706 AATTGAAAGGTTTACCATGAAATCA------AATGGATTTTTAACCTTATAA-ATTTTTG 48758 Query 92902 ACC-GATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAAT 92960 | | | | || || | |||||| ||| |||| ||||| | |||| || Sbjct 48759 GCATGTTTAGTTCAGTTAAAAGGTGATCAGCAACATATTCAATGTAGGTACACATTAATC 48818 Query 92961 CACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTA 93020 ||||||| || | | | ||||| ||||| || || || | || ||||| ||| Sbjct 48819 TTGAATTCATACCAATCATATCAACAGGAAGAGCATCAGTTAAATATTCCTTCTCAATTT 48878 Query 93021 CAACGGCTTCTTTCAAGATTTCTATT---ACTCTACTATTTGGTGGTTTTTGTACGACAT 93077 | || || | | | | ||||| || || || ||| | ||||| | | | || Sbjct 48879 CGACAGCATTTCTAATTATTTC-ATGCACACGCT-CTACA-GACGGTTTATTCTCAAGAT 48935 Query 93078 AATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCAT 93137 || | |||| | || ||||| || ||||||| ||||| |||| || || || |||| Sbjct 48936 AACTAAACATGAGACAAGCAAAATCTCTATGTAATCCTTCATCTCTGGAGATTAATTCAT 48995 Query 93138 TGCTGAATGTTA--AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAA 93195 | |||||| | ||||||| | | ||| ||||| || | |||||| ||||||||||| Sbjct 48996 T--TGAATGACACAAACCTGGCATTAATCCACGTTTTTTTAACCAAAAGATTGAAGCAAA 49053 Query 93196 ACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATT 93255 | |||||| |||||||| ||||| || || ||||| || | ||||||||| ||||| Sbjct 49054 AGAACCAGAGAAAAATATTCCTTCAACAGCGGCAAAAGCAATAATACGTTCTCCAAAAGA 49113 Query 93256 TGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT----AATACAAG 93311 ||| ||| | | |||||| ||||||||||||| || || ||||| ||| ||| Sbjct 49114 TGCATTCTTATCGTTAATCCATCTTAAAGCCCAATCAGCCTTCTTCTTGATAAATTCAAA 49173 Query 93312 GTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTAT 93371 | |||| | ||| || || || | || || || || | || || || ||||| | Sbjct 49174 CT-CTGTT---AAAGCATTGAAAAGCTTATTTCTTTCATCAGTGTCACGGATATATGTTT 49229 Query 93372 CGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGA 93431 | |||||| |||||||| ||| ||| | ||||||||| |||||||| ||||| || | Sbjct 49230 CAATTAACTTGGAATACATCTCACTATGAATATTCTCCATAGCAATTTGAAATCCATAAA 49289 Query 93432 AACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGA 93491 | | | ||||| | || || ||||||| |||||||| || || | ||||||||||| Sbjct 49290 AGAAACGTGCTTCAGGGACTTGGACTTCTTTTGAAAATCTTTCAACCAAATTTTCATTGA 49349 Query 93492 CTATACCATCGGATGCTGCaaaaaaaGC 93519 | || |||||||| || ||||| || || Sbjct 49350 CAATTCCATCGGAAGCAGCAAAGAAGGC 49377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556848201024400