Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq547 154 1e-32 seq15 149 5e-31 seq29 145 6e-30 seq28 113 4e-20 seq82 96.9 3e-15 >seq547 Length=3469 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| |||||||| || ||||| | ||||||||||| ||| | | Sbjct 1821 ATGCAAATTTTTGTTAAGACTTTAACTGGAAAAACAATTACTCTTGAAGTTGAACCATCT 1762 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | ||||| || ||||||||||| || || || ||||| |||||| Sbjct 1761 GACACTATCGACAACGTCAAATCCAAGATTCAAGACAAAGAAGGAATCCCACCAGATCAA 1702 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| |||||||| ||||| | || ||| | || |||| || |||||| Sbjct 1701 CAACGTCTTATCTTTGCCGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGACTACAAC 1642 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || || || | ||| | ||| | || | || |||||| Sbjct 1641 ATCCAAAAGGAGTCAACTCTCCATCTCGTTCTCCGTCTTCGTGGAGGT 1594 Score = 145 bits (160), Expect = 6e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||||||||| |||||||| || || || |||||||||| || ||| | || Sbjct 1593 ATGCAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCC 1534 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | |||| ||| |||||||| ||||| ||||| || || || ||| Sbjct 1533 GATACTATTGACAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAA 1474 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || || || | || ||| | || | || ||||| || Sbjct 1473 CAACGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAAT 1414 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||||||||||||| ||| | || || ||| Sbjct 1413 ATTCAAAAAGAATCAACCCTTCACTTGGTT 1384 >seq15 Length=622252 Score = 149 bits (164), Expect = 5e-31 Identities = 1098/1749 (63%), Gaps = 71/1749 (4%) Strand=Plus/Minus Query 128776 GACTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATG 128835 ||||| || |||||||| |||||||| || | || || | || | || || ||||| Sbjct 204911 GACTTATCAACGGTAAACTTAATAGCATCAACAGCTGGTCTTGTTCTTAAGTAATACATT 204852 Query 128836 CCTGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTG 128895 || || || ||||| | |||||| || | || || | | | | || || || Sbjct 204851 CCAGTCTTTAAACCACGTTTCCATCCATGGAAATGCATAGAACTACATACGGCATATGTT 204792 Query 128896 GGTTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCA 128955 |||| | | || ||||| ||||||| ||||||||| | | || ||||| ||| Sbjct 204791 GGTTTTGCTACATGAAGATTAAGTGATTGAGATTGATCAATGTAAGCTCCACGATCAGCA 204732 Query 128956 GCCATACCAATCAAAT--TTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCA 129013 ||||| |||| | || |||| | |||||||| || || || ||||| || | | Sbjct 204731 GCCATCTCAATGATATCCTTTTGAGAA--ATTTCCCAAACAGTCTTATAAAGTTCCTTGA 204674 Query 129014 CGTGTTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTC 129073 ||| |||||||| | | || || || | || || |||| ||||||| || Sbjct 204673 TATGTGTTGGTATTCCAGCGATATTTTGAATTGAACCATTATTTGATATAATTTCATTCA 204614 Query 129074 GCATCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTA 129133 | | ||| | |||| || || | |||||||| | ||| | || |||| Sbjct 204613 TAACTTCTTCACTCCACAAGTTAAGGTCAATCAAATCTTT----AAGAAGATGAGGATTA 204558 Query 129134 C----TTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTG--GTGAACGGCT 129187 ||| ||||| || | | ||| || || |||||| | | | || | || | Sbjct 204557 ACAATTTGGAAGTCTCCAGAGAGAACACGACGT--GTAAATATATTAGAAGTATATGGTT 204500 Query 129188 CAAACGATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGC 129247 ||| |||||||| || |||| ||||| || || | || || ||||| ||| | Sbjct 204499 CAATAGATTCATTATTCCCTAGAATTTGGGCAGTAGAAGCAGTTGGCATTGGAGCTAATA 204440 Query 129248 AAAGCGAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACA 129307 |||| || |||| | ||| |||| ||| | || || |||| | ||| ||||| | Sbjct 204439 AAAGGGAATTTCTTACACCATGCTTGGCAATTTTTTCCTTCAATTTAGCCCAATCCCATA 204380 Query 129308 TCGATGTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCC----AAACTGGCGGGA 129363 | ||||| |||||||| || ||||| || || || ||||||| | Sbjct 204379 AGTTACTTGGTGTTACATTCCACATATCATATTGTAAAATTCCTTTAGAAACTGGTGATC 204320 Query 129364 CTGGAAAAGTAGGA-ATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAA 129422 | || | || | || || || | | ||| || |||||||| || ||||| Sbjct 204319 CATGATATGTTTCATATGGTCCATCC--TTAGCA---GCTAATTCGCAGGAAGCCTCCAA 204265 Query 129423 TGCGCCAAAATAAATTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCTG-GTCGCTTT 129481 || ||| |||||| ||||| |||||| | || | |||||||| | | | | | Sbjct 204264 AGCTCCATGATAAATAGTTTCAAAAATTTTCTTATTAAGTTCTTTGGCCCGAGGAGATGT 204205 Query 129482 CGTACGGCATA-CGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATG 129540 | | || ||| | || | ||| || || || ||||||| ||| | || ||| Sbjct 204204 -GAATGG-ATATCTCATAAGCATAAAACAATCAGCTAATCCTTGAACACCAATTCCAATG 204147 Query 129541 GGTCGATGTTTTCTATTGGATTTTTGTGCCGACA---ACAAGGGATAGTAGTTGATGTCT 129597 || |||||| | || ||||| | |||| || ||| ||||| || |||| || Sbjct 204146 GGGCGATGTCTAAAGTTTGATTTCTTTGCCT-CAGGTACA--GGATAATAATTGACATCA 204090 Query 129598 ATAATTTTGTTTAAATTCTTGACCACAATTTTCGTTAC--------GTATTTTAACATTT 129649 |||||||| || ||||| || | | ||| || | || || |||| ||| Sbjct 204089 ATAATTTTATTCAAATTTTTAGCAAGAATCTTAGAAACAAGATGAAGTTGATTAAAATTA 204030 Query 129650 CAAAATTGTACTCGCCTACATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAAT 129709 | || || | ||| || || || || ||| ||| | ||| || | |||| Sbjct 204029 AATGATGGT--TGCCCTTTCTCAATATCAACGAATCTATTCAATGCAATTGATCCTAAAT 203972 Query 129710 TGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTAT 129769 | || || ||| ||| | | ||| || || |||||||| | || | |||| | Sbjct 203971 TACAAACAGCAACTTCATCTGGAGCACAATATTCAACAATTTCAGTACAAAGATTAGAAC 203912 Query 129770 TTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCA 129829 |||||| || ||||| | | |||||||||||| | || ||| ||| ||||| | || Sbjct 203911 ATTTAATTGTTCCCAAGTTTTGTTGATTACTTTTTCTATTACAATGATCCTTGTAAACCA 203852 Query 129830 TGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAACAAGT--CTCGAGC 129887 | || || || || ||||| | ||| |||| |||| | || ||| | | | ||| Sbjct 203851 TATATGGAGTTCCAGTTTCTATTTGACTTTC-ACAAATCTTTTGC-CAAATAACCCTAGC 203794 Query 129888 CTTGATCTGTCTTACAAATTTGCCACATTTCTC-GTATGCCACAT-----ACAGTTGTTC 129941 |||||| ||| || || || ||||| || | || | ||| || ||| Sbjct 203793 CTTGATTTGTTTTC------TGTAACGCTTCTCAGTCTCATACTTTGTGTACAATTTTTC 203740 Query 129942 AAATTCTGAGCCGTGTACGGTGT-CGAGCAACGGCGATTCACGCGGACACATCAAACTCC 130000 |||||| || || | | | | || ||||| | ||||||||||| || Sbjct 203739 AAATTCATCCCCCCA-ACAATCTTCTAATCCTGGACATTCATGAGGACACATCAATGACC 203681 Query 130001 ACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACA 130060 | | ||| ||| || ||||||||||||||||| || ||||| | | || || | Sbjct 203680 AATATGAATCTTTTTCAACACGTTTCATAAACAAATCAGGAACCCATAAACCATAGAATA 203621 Query 130061 AATCTC--GCGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTA 130118 |||| | || | || || | || | | || || | || || || | || || Sbjct 203620 AATCACGAGCACGTTCCTCTTCTGGTCCTGTATTTTTC--TTAAGATCCAAAAATTCCAT 203563 Query 130119 AATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCC---CTTCCGTTTGCCCCC 130175 ||| || || ||||| ||||| | ||||||||| | || || || || || || Sbjct 203562 AATATCTGCATGCCATGGTTCCAAATAAATTGCAAAAGCTCCAGGTCTCTTATTTCCACC 203503 Query 130176 TTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGC 130235 ||| ||||| | | | | ||||||| | |||| |||||||| ||||||| || | Sbjct 203502 TTGATCAACATATCTTGCAGTATTGTTGAAAACTCTCAACATTGGTACCAATCCATTTGA 203443 Query 130236 CGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACC 130295 || || || || | |||| || ||| || |||| |||||| ||| || Sbjct 203442 TGTTCCATTAGTTCCACCAATAAATGATCCATTGGCACGAATACAATGAACATTTAATCC 203383 Query 130296 TATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCGTAGCGTTTCATAAATGCCAAC 130355 || || || || ||||||| || || || || | | || |||||||| || | Sbjct 203382 AATACCTCCAGCAGATTTTGAAATTAAAGCACATTGTTTCAATGTATCATAAATCCCTTC 203323 Query 130356 GATACTGTCTTCTTTAATGTTTAGGAGGAAACACGAGGCCAATTGGGCGTAACATGATCC 130415 ||| ||| | || ||| | |||||| || | |||||| | | || ||| Sbjct 203322 AATAGAATCTCCAGCCATTGTTAATAAGAAACATGAAGACAATTGTGGACGAGTTGTTCC 203263 Query 130416 GCTGGCAAACAAAGTTGGACTTGCATGTGTATACATTTTGTGTGCCATCAAATTGTACGT 130475 ||| | |||||| ||||||||| || ||| |||| ||| |||||||| || Sbjct 203262 TGCATTAAATAGTGTTGGAGAAGCATGTGTAAACCATTTCTGTGACATAAAATTGTATGT 203203 Query 130476 TTCAAAAAC 130484 ||| | ||| Sbjct 203202 TTCGATAAC 203194 >seq29 Length=268433 Score = 145 bits (160), Expect = 6e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||||||||| |||||||| || || || |||||||||| || ||| | || Sbjct 198542 ATGCAGATTTTTGTTAAGACTTTAACTGGAAAGACAATCACTCTTGAGGTTGAACCTTCC 198483 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | |||| ||| |||||||| ||||| ||||| || || || ||| Sbjct 198482 GATACTATTGACAACGTCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCTCCAGACCAA 198423 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || || || | || ||| | || | || ||||| || Sbjct 198422 CAACGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTTTCTGATTATAAT 198363 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||||||||||||| ||| | || || ||| Sbjct 198362 ATTCAAAAAGAATCAACCCTTCACTTGGTT 198333 >seq28 Length=270198 Score = 113 bits (124), Expect = 4e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||||||||| ||||| ||| | || ||||| || ||||||||||||| || | Sbjct 52773 AGATGCAAATTTTCGTTAAGACTCTTACTGGTAAGACTATCACTCTTGAAGTCGAGCCAT 52714 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | |||||| | || || | ||| || || ||||| ||||| ||||| || || |||| Sbjct 52713 CAGATACCATCGAGAATGTAAAAGCCAAGATCCAAGATAAGGAAGGTATCCCTCCAGATC 52654 Query 22337 AACAACGTCTTATATTTGCCGGCAA 22361 | ||||||||||| |||||||| || Sbjct 52653 AGCAACGTCTTATCTTTGCCGGTAA 52629 >seq82 Length=59906 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 22203 TTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCT 22262 ||||| || | || |||||||| || || |||||| | || || ||||| ||||||| Sbjct 47725 TTATATTTTAGGAATCATGCAAATCTTCGTCAAAACTCTTACTGGCAAAACTATCACTCT 47784 Query 22263 TGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGG 22322 |||||| || | ||||||| | || || |||| ||||| ||||| ||||| || Sbjct 47785 TGAAGTTGAGCCATCCGATACTATTGATAATGTCAAGTCTAAAATCCAAGAGAAGGAAGG 47844 Query 22323 TATTCCACCCGATCAACAACGTCTTATATTTGCCGG 22358 ||||| || || |||||||| || || ||||| || Sbjct 47845 AATTCCTCCTGACCAACAACGCCTCATCTTTGCTGG 47880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419718741062650