Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq547 161 2e-34 seq29 161 2e-34 seq641 129 1e-24 seq4 86.0 1e-11 >seq547 Length=3469 Score = 161 bits (178), Expect = 2e-34 Identities = 175/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 68230 AATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAAT 68289 ||||||| || ||||| || | |||||||| || || || |||||||| || ||||||| Sbjct 1362 AATTTCCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAAT 1421 Query 68290 CGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGG 68349 | || || || || |||||||| | ||||| || || || || || | ||||||||| | Sbjct 1422 CAGAAAGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTG 1481 Query 68350 GTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATT 68409 | || || |||||||| ||||||||||||| ||||||| || || || || | | || Sbjct 1482 GAGGGATACCTTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTT 1541 Query 68410 CTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || | ||||| || ||||| || | ||||| || || |||||||| Sbjct 1542 CAACCTCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 1593 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | || | || || || ||||| ||||||||||| || || ||| Sbjct 1595 CCTCCACGAAGACGGAGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCAGAG 1654 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| | || || ||||| || || || | |||||| || ||||| Sbjct 1655 AGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGATCTGGTGGG 1714 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||||||||| | |||||| ||||| ||||| | || ||| ||| Sbjct 1715 ATTCCTTCTTTGTCTTGAATCTTGGATTTGACGTTGTCGATAGTGTCAGATGGTTCAACT 1774 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | || || |||||||| || | ||||| || || || |||||| Sbjct 1775 TCAAGAGTAATTGTTTTTCCAGTTAAAGTCTTAACAAAAATTTGCATT 1822 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || | |||||||||||| |||||||| |||||||| || || ||||| ||| Sbjct 2115 CCTGCAAAGATTAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTATCCTGGATCTTAGCC 2174 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 |||||| || || ||||||| | || ||||| | || || || || || || | Sbjct 2175 TTGACGTTATCAATAGTGTCTGAAGGCTCAACTTCAAGCGTTATAGTCTTCCCTGTCAAA 2234 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||| Sbjct 2235 GTCTTAACAAAGATTTGCAT 2254 >seq29 Length=268433 Score = 161 bits (178), Expect = 2e-34 Identities = 175/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 68230 AATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAAT 68289 ||||||| || ||||| || | |||||||| || || || |||||||| || ||||||| Sbjct 198311 AATTTCCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATATTATAAT 198370 Query 68290 CGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGG 68349 | || || || || |||||||| | ||||| || || || || || | ||||||||| | Sbjct 198371 CAGAAAGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGGTCTG 198430 Query 68350 GTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATT 68409 | || || |||||||| ||||||||||||| ||||||| || || || || | | || Sbjct 198431 GAGGGATACCTTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGGAAGGTT 198490 Query 68410 CTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || | ||||| || ||||| || | ||||| || || |||||||| Sbjct 198491 CAACCTCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 198542 >seq641 Length=2967 Score = 129 bits (142), Expect = 1e-24 Identities = 159/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 68248 GCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCAT 68307 |||| | || ||| |||||| ||| || ||||| || ||||| | || || | ||| | Sbjct 497 GCAAAATCAGGTGGAGCGTGCTCTCCTTCTGGATATTGTAATCAGCAAGCGTGCGCCCGT 438 Query 68308 CTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGT 68367 |||| ||| || || ||||| | || | || |||| || || ||||||||||||| Sbjct 437 CTTCCAACAGCACTCCAGCGAAGACCAGGCGCTGCTGGTGAGGAGGGATGCCTTCCTTGT 378 Query 68368 CTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATG 68426 |||| ||||| ||||| ||||| ||||| | || ||| | || || || | || ||| Sbjct 377 CTTGGATCTTCGCCTTCACGGCGTCGATCGAATC-GCTCGGCTCCACCTCAAGGGCAATG 319 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || |||||||||||||| |||||||| Sbjct 318 GTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 284 >seq4 Length=1570035 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 524754 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 524813 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 524814 CCCGCATCGGGC 524825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921601548293200