Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq547 105 6e-18 seq29 105 6e-18 >seq547 Length=3469 Score = 105 bits (116), Expect = 6e-18 Identities = 166/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 114145 ATTTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGT 114204 ||| | || | || ||||| || | | ||| || || | || |||||||||||||| | Sbjct 1356 ATTGAAAATTTCCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATAT 1415 Query 114205 TGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTT 114264 | ||||| | ||| | |||||||||||| || ||||| | || ||||| |||| Sbjct 1416 TATAATCAGAAAGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTT 1475 Query 114265 GGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGG 114324 |||| ||||| || ||||| || || ||||||| || | | |||| || |||| Sbjct 1476 GGTCTGGAGGGATACCTTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGG 1535 Query 114325 TGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||| || || | || | || || || || | ||| || |||||||||||||| Sbjct 1536 AAGGTTCAACCTCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 1593 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| | ||| | || || || ||||| |||||||| || Sbjct 1592 ATACCTCCACGAAGACGGAGAACGAGATGGAGAGTTGACTCCTTTTGGATGTTGTAGTCA 1651 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||||||||||||||| || || |||| ||||| ||||| || || Sbjct 1652 GAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGATCTGGT 1711 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| |||||| ||| | | || | ||||| | | ||| Sbjct 1712 GGGATTCCTTCTTTGTCTTGAATCTTGGATTTGACGTTGTCGATAGTGTCAGATGGTTCA 1771 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || | ||| || |||||||| ||||| Sbjct 1772 ACTTCAAGAGTAATTGTTTTTCCAGTTAAAGTCTTAACAAAAATTTGCAT 1821 >seq29 Length=268433 Score = 105 bits (116), Expect = 6e-18 Identities = 166/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 114145 ATTTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGT 114204 ||| | || | || ||||| || | | ||| || || | || |||||||||||||| | Sbjct 198305 ATTGAAAATTTCCACCACGAAGACGGAGAACCAAGTGAAGGGTTGATTCTTTTTGAATAT 198364 Query 114205 TGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTT 114264 | ||||| | ||| | |||||||||||| || ||||| | || ||||| |||| Sbjct 198365 TATAATCAGAAAGAGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTT 198424 Query 114265 GGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGG 114324 |||| ||||| || ||||| || || ||||||| || | | |||| || |||| Sbjct 198425 GGTCTGGAGGGATACCTTCCTTATCTTGAATCTTTGACTTGACGTTGTCAATAGTATCGG 198484 Query 114325 TGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||| || || | || | || || || || | ||| || |||||||||||||| Sbjct 198485 AAGGTTCAACCTCAAGAGTGATTGTCTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 198542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420125132097720