Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq24 105 6e-18 >seq24 Length=311514 Score = 105 bits (116), Expect = 6e-18 Identities = 262/395 (66%), Gaps = 2/395 (1%) Strand=Plus/Minus Query 20190 TGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACAT 20249 |||| ||||| |||||||| | ||||||| ||| || || | | | ||| | | Sbjct 228949 TGTAAATGTGAGCATCTCCAATAGTGTGAACAAAATCACCTGCTTCCAATCCACATATTT 228890 Query 20250 GAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCA 20309 || ||||||| ||| | || || || ||||| || ||||||||||| | || | Sbjct 228889 TTGCTAGCATATGAGTCAGAAGAGAGTAAGAAGCAATATTGAAAGGAACTCCAAGTCCTA 228830 Query 20310 TGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGAC 20369 ||||| | ||||||| |||||| | ||| || || |||||||||||| Sbjct 228829 CATCTCCACTGCGTTGATACAATTGACAGCTTAACTCTCCATCTTGAACATAAAATTGAA 228770 Query 20370 ATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAG-TCCGCCGGGTTCCACGCACAC 20428 || || || || || || |||| || |||| || | || ||||| || | Sbjct 228769 CCAAAGTATGGCATGGAGGGAGAACCATTAA-ATCAAGATCAGAAGGATTCCATGCTGAT 228711 Query 20429 ATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGG 20488 | || ||||||| | | || |||||||| ||| ||| |||| | | |||||| Sbjct 228710 AAGATTATTCTTCGAGAATCTGGGTTATTTTTAATTTGATCAACAACCTGAGCCAATTGA 228651 Query 20489 TCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTC 20548 |||| |||| ||||| || || ||||| | | | || || ||||| || ||| Sbjct 228650 TCAACTCCCTTTCCTGTGTAATCGGCATCAACTCCTTCATATTTAGCTCCAAAATGTCTC 228591 Query 20549 CACTGGAAACCGTAAACAGGTCCCAAATCCCCCTC 20583 || || || |||||||| || || ||||| ||||| Sbjct 228590 CATTGAAATCCGTAAACTGGACCTAAATCTCCCTC 228556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441362813940400