Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq142 197 4e-46 seq475 100 8e-17 seq774 82.4 2e-11 >seq142 Length=20931 Score = 197 bits (218), Expect = 4e-46 Identities = 243/334 (73%), Gaps = 15/334 (4%) Strand=Plus/Minus Query 42807 CGCCGAAGCGCAGGGCGTCCATGACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGC 42866 |||||||||||||||||| || | || |||||||| |||||||||| || || ||||| Sbjct 15631 CGCCGAAGCGCAGGGCGTTCAGCAGGGCCACCGGGCGCGCGCCCATGGTGAAGACGTCGC 15572 Query 42867 GGACGATGCCGCCCACACCCGTCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGT 42926 | | |||||||||||| ||||||||||| ||||| | ||||||||| | |||||||||| Sbjct 15571 GCATGATGCCGCCCACGCCCGTCGCCGCACCCTGATAAGGCTCGATGTAGGAGGGGTGGT 15512 Query 42927 TGTGACTCTCCGCCTTGAACGTGACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGT 42986 |||| |||||| |||||| || || || ||| ||| |||||| |||||||||| Sbjct 15511 TGTGGCTCTCCATCTTGAAGATGCAGGCGTCGCCGTCGTCGATGTCGATCACGCCCGCGT 15452 Query 42987 TCTGCCCCATCCCGACCATGAGGCGCTCGCGCATCTCGTCCGAGACCTTCTGCCCGAACC 43046 ||| || ||| |||| |||||||| ||| ||| ||| Sbjct 15451 TCTCGCCGGGGCCGCAGATGACGCGCTCGC---------CCGTGAC------GGGGAATT 15407 Query 43047 TCTTGAGGTAGAGCTTGCTCGACTTGTAGGAGCAGTGCTCCGACCACATCACCGAGTACA 43106 || | || | | |||| ||| || || ||||||||||| |||||||| |||||| ||| Sbjct 15406 TCATCAGCTGGTTCTTGGACGATTTATACGAGCAGTGCTCGGACCACATGACCGAGAACA 15347 Query 43107 TCGCCAGCTCGCCCGAGGTGGGGCGGCGGCCGAG 43140 |||||||| || | |||| |||||| || Sbjct 15346 CGCCCAGCTCGACCTGGTTGGGCTCGCGGCCCAG 15313 >seq475 Length=4263 Score = 100 bits (110), Expect = 8e-17 Identities = 76/89 (85%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 39 GTCTGGTGCCCCCGGATGGATTCGAACCATCGACACGCGAATTAGAAGGCCGCTGCTCTA 98 || |||||||||||| ||||||||||| |||| || |||||||||||| ||||||| Sbjct 2172 GTGTGGTGCCCCCGGCAGGATTCGAACCTGCGACCAACGGATTAGAAGGCCGTTGCTCTA 2231 Query 99 TCCCCTGAGCTACGGAGGCGGG--CTTCG 125 ||| |||||||||||||||||| ||||| Sbjct 2232 TCCACTGAGCTACGGAGGCGGGTACTTCG 2260 >seq774 Length=2264 Score = 82.4 bits (90), Expect = 2e-11 Identities = 204/307 (66%), Gaps = 2/307 (1%) Strand=Plus/Minus Query 41506 GCGGCGCGAGACGTCGTCGATGAGGCCGAGCACGCCCACGAGAGGAGTGGGGTGGATCGG 41565 |||| ||| | |||| ||| ||||| | |||| ||| || || || | |||| Sbjct 2014 GCGGTGCGCGTAGTCGGGGATCAGGCCCACGGCGCCGACGGTCGGGGTCGGCGGAATCGC 1955 Query 41566 CACGTCGCCGGTCTGGTTGTAGAACGAGACGTTCCCGCCCGTGACCGGGGTGCCCAGGGC 41625 | || || ||||| |||||||| |||||| |||| | ||||||| | | ||| | Sbjct 1954 CGCGCCGTTGGTCTCGTTGTAGAGGCTGACGTTGCCGCTCACGACCGGGAAGTCGAGGTC 1895 Query 41626 GTAGCAGCCGTCGGCGAGCCCGTCCACCGTCTGACCGAACTGCCACATGACCTCGGGATT 41685 | ||| | || || | || || | | | ||| ||| | ||||| ||| || Sbjct 1894 GCGGCAAGCTTCCGCCATGCCCTCGATGGCGCGCACGATCTGGCCCATGATCTCAGGGCG 1835 Query 41686 CTCCGGGGAGCCGAAGTTCAGGCAGTCGGTGACCGCAGTGGGCACGGCGCCGGTGACCGC 41745 ||| ||| ||||||||||||| |||||||| || || |||||||| | | | Sbjct 1834 CTCGGGGTTGCCGAAGTTCAGGTTGTCGGTGATGGCGACCGGGTCGGCGCCGACGGCGGT 1775 Query 41746 GACGTTGCGGTAGGCCTCGGCGAGGGCGAGCTGTGCGCCCGCGTACGGGTCGAGCTGGCA 41805 | |||||| | |||||||| | ||| ||| ||||| || | || ||| || ||| Sbjct 1774 CAGGTTGCGCCAAGCCTCGGCCACGGCCTGCTTGCCGCCCTCGAAGGGATCG-GCCAGCA 1716 Query 41806 -GTAGCG 41811 |||||| Sbjct 1715 CGTAGCG 1709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148243213628940